GEO Browser - GEO

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65 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Oryza sativa
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Rhodonia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE21152	Conservation and divergence of methylation patterning in plants and animals	Methylation profiling by high throughput sequencing	Apis mellifera Arabidopsis thaliana Chlamydomonas reinhardtii Ciona intestinalis Danio rerio Mus musculus Oryza sativa Populus trichocarpa	14	TXT SRA Run Selector	matteo Pellegrini	Apr 09, 2010
GSE21414	Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with rice centromeres	Methylation profiling by high throughput sequencing	Oryza sativa	1	TXT SRA Run Selector	Yufeng Wu	Apr 22, 2010
GSE22591	Local DNA hypomethylation activates genes in rice endosperm	Methylation profiling by high throughput sequencing	Oryza sativa	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Nov 01, 2010
GSE42410	Plants regenerated from tissue culture contain stable epigenome changes in rice	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	37	TXT SRA Run Selector	Hume Stroud	Mar 26, 2013
GSE44898	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	16	GFF SRA Run Selector	Toshiro Nishimura	May 01, 2013
GSE57062	Improved tagmentation-based whole genome bisulfite sequencing for input DNA from less than 100 cells	Methylation profiling by high throughput sequencing	Oryza sativa	7	TXT SRA Run Selector	Desheng Gong	May 01, 2014
GSE57706	Genome-wide maps of DNA methylation state in rice embryo and endosperm	Methylation profiling by high throughput sequencing	Oryza sativa	13	TXT SRA Run Selector	yijing zhang	Sep 01, 2015
GSE60288	Single-base resolution DNA methylation maps of rice cultivars under control and stress conditions	Methylation profiling by high throughput sequencing	Oryza sativa	7	TXT SRA Run Selector	Mukesh Jain	Dec 31, 2015
GSE77710	Both maternally and paternally imprinted genes regulate seed development in rice	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Oryza sativa	14	TXT SRA Run Selector	Jingya Yuan	Feb 04, 2017
GSE79154	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Oryza sativa	3	TAR SRA Run Selector	yiwen Deng	Mar 08, 2018
GSE79155	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [MeDIP-seq]	Methylation profiling by high throughput sequencing	Oryza sativa	2	TAR SRA Run Selector	yiwen Deng	Mar 08, 2018
GSE89789	DNA demethylation is initiated in the central cells of Arabidopsis and rice	Methylation profiling by high throughput sequencing	Arabidopsis thaliana Oryza sativa	5	GFF SRA Run Selector	Xiaoqi Feng	Nov 30, 2016
GSE94319	A genome-wide survey of DNA methylation in OsNAR2.1 transgenic plants	Methylation profiling by high throughput sequencing	Oryza sativa	15	XLS XLSX SRA Run Selector	Xiaorong Fan	Jan 31, 2020
GSE95107	DNA demethylation activates genes in seed maternal integument development in rice (Oryza sativa L.)	Methylation profiling by high throughput sequencing	Oryza sativa	6	BIGWIG TXT SRA Run Selector	Jian zhang	Oct 10, 2017
GSE108777	N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses [MeDIP-seq 93-11]	Methylation profiling by high throughput sequencing	Oryza sativa	3	BW SRA Run Selector	Xiaofeng Gu	Dec 10, 2018
GSE108780	N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses [SMRT sequencing 93-11]	Methylation profiling by high throughput sequencing	Oryza sativa	1	GFF SRA Run Selector	Xiaofeng Gu	Dec 10, 2018
GSE108781	N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses [MeDIP-seq Nipponbare]	Methylation profiling by high throughput sequencing	Oryza sativa	3	BW SRA Run Selector	Xiaofeng Gu	Dec 10, 2018
GSE108783	N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses[SMRT sequencing Nipponbare]	Methylation profiling by high throughput sequencing	Oryza sativa	1	GFF SRA Run Selector	Xiaofeng Gu	Dec 10, 2018