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1369 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Mus musculus		SRA Run Selector
GSE11034	Genome-scale DNA methylation maps of pluripotent and differentiated cells	Methylation profiling by high throughput sequencing	Mus musculus	18	TXT SRA Run Selector	Tarjei S Mikkelsen	Jul 06, 2008
GSE14254	Global Mapping of Histone H3 K4 and K27 Trimethylation: Lineage Fate Determination of Differentiating CD4+ T Cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Weiqun Peng	Jan 21, 2009
GSE17642	Genome-wide mapping of Eset-binding sites and H3K9me3 state in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	3	BED TXT SRA Run Selector	Mikael Huss	Nov 04, 2009
GSE19786	Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	2	BEDGRAPH SRA Run Selector	Adrian P Bird	Mar 04, 2010
GSE19960	Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by Aid deficiency	Methylation profiling by high throughput sequencing	Mus musculus	12	TXT SRA Run Selector	matteo Pellegrini	Jan 26, 2010
GSE20898	Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	53	BED BEDGRAPH RPKM SRA Run Selector	Brian J Abraham	Aug 26, 2011
GSE21152	Conservation and divergence of methylation patterning in plants and animals	Methylation profiling by high throughput sequencing	Apis mellifera Arabidopsis thaliana Chlamydomonas reinhardtii Ciona intestinalis Danio rerio Mus musculus Oryza sativa Populus trichocarpa	14	TXT SRA Run Selector	matteo Pellegrini	Apr 09, 2010
GSE21242	Chromatin and Sequence Features that Define the Fine and Gross Structure of Genomics Methylation Patterns	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BED TXT SRA Run Selector	John R. Edwards	Apr 16, 2010
GSE21442	Comprehensive analysis of orphan CpG islands identifes novel promoters with conserved DNA methylation dynamics	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	32	BEDGRAPH SRA Run Selector	Adrian P Bird	Oct 05, 2010
GSE24841	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (ChIP/DIP-Seq data)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	17	BED SRA Run Selector	Kristine Williams	Apr 13, 2011
GSE25398	Selective chemical labeling reveals intragenic enrichment of 5-hydroxymethylcytosine in mouse cerebellum	Methylation profiling by high throughput sequencing	Mus musculus	13	SRA Run Selector	Keith E Szulwach	Dec 12, 2010
GSE25688	Cell Type-Specific DNA Methylation at Intragenic CpG Islands in the Immune System (MAP-Seq and ChIP-Seq data)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	10	BEDGRAPH SRA Run Selector	Adrian Bird	May 23, 2011
GSE25898	Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals (meDIP)	Methylation profiling by high throughput sequencing	Mus musculus	4	BED SRA Run Selector	naomi habib	Jan 14, 2011
GSE26098	Widespread targeted chromatin remodeling during the initial phase of somatic cell reprogramming [RRBS]	Methylation profiling by high throughput sequencing	Mus musculus	4	TXT SRA Run Selector	Richard Koche	Jan 03, 2011
GSE26758	DNA methylation in the colon of Dnmt3b-induced and control mice	Methylation profiling by high throughput sequencing	Mus musculus	12	TXT SRA Run Selector	Eveline Steine	Oct 26, 2011
GSE27322	de novo DNA Methylation Balances Hematopoietic Stem Cell Self-Renewal and Differentiation	Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	10	BAM BED CEL SRA Run Selector	deqiang sun	Sep 30, 2011
GSE27468	Methylome analysis of 18 wild-type and mutant mouse ES, NP and MEF cells	Methylation profiling by high throughput sequencing	Mus musculus	18	BAM SRA Run Selector	Gareth Wilson	Feb 24, 2011
GSE28254	Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED WIG SRA Run Selector	Arjen Brinkman	Mar 27, 2012
GSE28532	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells (ChIP-seq data)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	14	BED SRA Run Selector	Feizhen Wu	Apr 21, 2011
GSE28533	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells (bisulfite sequencing data)	Methylation profiling by high throughput sequencing	Mus musculus	4	BED TXT SRA Run Selector	Feizhen Wu	Apr 21, 2011