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66 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Methylation profiling by high throughput sequencing	Mus musculus		BED
GSE246632	Single-Molecule Direct RNA Sequencing Reveals the Shaping of Epitranscriptome Across Multiple Species	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Chlamydomonas reinhardtii Homo sapiens Mus musculus Oryza sativa	13	BED	Yingyuan Xie	Apr 29, 2025
GSE293055	DAXX is required for spermatogenesis and governs the silencing of LINE1 during meiosis in male	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	40	BED NARROWPEAK TXT	shen jin	Apr 01, 2025
GSE217627	Single-Cell 5-Hydroxymethylcytosine Landscapes of Mammalian Early Embryos at Single-Base Resolution	Methylation profiling by high throughput sequencing	Mus musculus	533	BED	Jinmin Yang	Feb 23, 2025
GSE266926	Rescuing DNMT1 Fails to Fully Reverse the Molecular and Functional Repercussions of Its Loss in Mouse Embryonic Stem Cells [EM-seq]	Methylation profiling by high throughput sequencing	Mus musculus	9	BED TXT	Serge McGraw	Feb 10, 2025
GSE267053	Rescuing DNMT1 Fails to Fully Reverse the Molecular and Functional Repercussions of Its Loss in Mouse Embryonic Stem Cells.	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	96	BED BW TXT	Serge McGraw	Feb 10, 2025
GSE276883	The DNA demethylase TET1 modifies the impact of maternal folic acid status on embryonic brain development	Methylation profiling by high throughput sequencing	Mus musculus	4	BED TXT	Lehua Chen	Nov 08, 2024
GSE275401	The DNA demethylase TET1 modifies the impact of maternal folic acid status on embryonic brain development	Methylation profiling by high throughput sequencing	Mus musculus	36	BED BW TXT	Lehua Chen	Oct 24, 2024
GSE226580	Stem Cell Activity-Coupled Suppression of Endogenous Retrovirus Governs Adult Tissue Regeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	94	BED BROADPEAK MTX NARROWPEAK TSV	Yejing Ge	Oct 17, 2024
GSE227078	Stem Cell Activity-Coupled Suppression of Endogenous Retrovirus Governs Adult Tissue Regeneration [WGBS]	Methylation profiling by high throughput sequencing Other	Mus musculus	8	BED	Yejing Ge	Oct 17, 2024
GSE267627	Single-cell m6A profiling in the mouse brain uncovers cell type-specific RNA methylomes and age-dependent differential methylation [GLORI]	Methylation profiling by high throughput sequencing	Mus musculus	4	BED	Matthew Tegowski	Sep 24, 2024
GSE275545	A Multi-omics Study of Epigenetic Changes in Type II Alveolar Cells of A/J Mice Exposed to Environmental Tobacco Smoke	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	72	BED CSV TXT	Natalia Tretyakova	Sep 18, 2024
GSE243364	Whole genome bisulfite sequencing (WGBS) of intestinal organoids from mice with graft-versus-host disease	Methylation profiling by high throughput sequencing	Mus musculus	6	BED TXT	Tyler J Leach	Sep 11, 2024
GSE247855	FoxA1/2-dependent epigenomic reprogramming drives lineage switching in lung adenocarcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	93	BED BW COV TXT	Katherine Gillis	Sep 11, 2024
GSE241308	TET2 regulates histone H2AK119ub and leukemogenesis through LTR RNA m5C oxidation [seq_RNA-caRNA-m5C-MeRIP]	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BED TXT	Xiaoyang Dou	Jul 25, 2024
GSE271464	Chromatin-associated LTR RNA m5C oxidation by TET2 regulates chromatin state and leukemogenesis [seq_RNA-caRNA-UBS-amplicon]	Methylation profiling by high throughput sequencing	Mus musculus	6	BED	Xiaoyang Dou	Jul 25, 2024
GSE241347	Chromatin-associated LTR RNA m5C oxidation by TET2 regulates leukemogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	291	BED BIGWIG BROADPEAK NARROWPEAK TXT	Xiaoyang Dou	Jul 24, 2024
GSE247068	MeRIP-seq data of MACO/R model mice at 0, 6 and 24 hours in the brain	Methylation profiling by high throughput sequencing	Mus musculus	16	BED	li bingwu	Jul 17, 2024
GSE240863	Single cell discovery of m6A RNA modifications in the hippocampus	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	43	BED CSV RDS TXT	Magdalena Justyna Koziol	May 07, 2024
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE218001	Gut microbiota rewires host mRNA m6A epitranscriptomic landscape via bile acid metabolism	Methylation profiling by high throughput sequencing	Mus musculus	57	BED	Xiaoyun Wang	Apr 21, 2024