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32 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			TSV	Robert J Schmitz
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE93024	TET-mediated epimutagenesis of the Arabidopsis thaliana methylome	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	32	BED TSV TXT SRA Run Selector	Robert J Schmitz	Mar 02, 2018
GSE120304	Widespread Long-range Cis-Regulatory Elements in the Maize Genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Zea mays	81	BED TSV TXT SRA Run Selector	Robert J Schmitz	Sep 19, 2019
GSE128687	Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Eutrema salsugineum	41	BED TSV TXT SRA Run Selector	Robert J Schmitz	Aug 06, 2019
GSE161234	Unusual predominance of maintenance DNA methylation in Spirodela polyrhiza	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Spirodela polyrhiza	4	BED TSV SRA Run Selector	Robert J Schmitz	Aug 24, 2022
GSE80300	A comparative analysis of 5-azacytidine and zebularine induced DNA demethylation using whole-genome bisulfite sequencing	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	15	DIFF TSV SRA Run Selector	Robert J Schmitz	Jun 24, 2016
GSE58066	Dnmt3L-histone H3 binding is necessary for male fertility and non-CG methylation	Methylation profiling by high throughput sequencing	Mus musculus	2	TSV SRA Run Selector	Robert J Schmitz	Jan 14, 2015
GSE58217	Methylated DNA is over-represented in whole-genome bisulfite sequencing data	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	TSV SRA Run Selector	Robert J Schmitz	Sep 11, 2014
GSE63371	Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-TAB-seq	Methylation profiling by high throughput sequencing	Caldicellulosiruptor acetigenus synthetic construct	7	TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2015
GSE68814	Survey of methylomes of two beetles, Nicrophorus vespilloides and Tribolium castaneum	Methylation profiling by high throughput sequencing	Nicrophorus vespilloides Tribolium castaneum	6	TSV TXT SRA Run Selector	Robert J Schmitz	Oct 21, 2015
GSE70518	Neurospora MUS-30 is an LSH/DDM1 homolog required for normal genome maintenance	Methylation profiling by high throughput sequencing	Neurospora crassa	7	TSV SRA Run Selector	Robert J Schmitz	Dec 21, 2015
GSE70519	DNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes	Methylation profiling by high throughput sequencing	Homo sapiens	7	TSV SRA Run Selector	Robert J Schmitz	Jul 05, 2016
GSE72432	Brain neuronal cell nuclei with exceptionally high levels of hydroxymethylcytosine	Methylation profiling by high throughput sequencing	Mus musculus	3	TSV SRA Run Selector	Robert J Schmitz	Jul 07, 2022
GSE73684	Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine	Methylation profiling by high throughput sequencing	Sus scrofa	3	TSV SRA Run Selector	Robert J Schmitz	Jul 20, 2016
GSE76982	Histone H1 limits DNA methylation in Neurospora	Methylation profiling by high throughput sequencing	Neurospora crassa	7	TSV TXT SRA Run Selector	Robert J Schmitz	Apr 20, 2016
GSE79526	Widespread natural variation of DNA methylation within angiosperms	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Beta vulgaris Brachypodium distachyon Brassica rapa Cannabis sativa Citrus x clementina Cucumis sativus Erythranthe guttata Eucalyptus grandis Eutrema salsugineum Fragaria vesca Lotus japonicus Malus domestica Manihot esculenta Medicago truncatula Panicum hallii Panicum virgatum Populus trichocarpa Prunus persica Ricinus communis Setaria viridis Sorghum bicolor Theobroma cacao Vitis vinifera	34	TSV SRA Run Selector	Robert J Schmitz	Sep 02, 2016
GSE79746	Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	21	TSV TXT SRA Run Selector	Robert J Schmitz	Jul 22, 2016
GSE86907	A novel requirement for Drosha in maintenance of mammalian CG methylation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	12	TSV TXT SRA Run Selector	Robert J Schmitz	Jul 27, 2017
GSE94298	Stable Inheritance of Spontaneous Epialleles in Arabidopsis thaliana	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	36	TSV SRA Run Selector	Robert J Schmitz	Jul 24, 2017
GSE94299	Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Glycine max	59	TSV TXT SRA Run Selector	Robert J Schmitz	Oct 01, 2019