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742 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			TSV
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Candidozyma auris Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Rhodonia placenta Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE249241	DNA methylation enables recurrent endogenisation of giant viruses in an animal relative	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Amoebidium appalachense Amoebidium parasiticum Creolimax fragrantissima Ichthyosporea sp. XGB-2017a Sphaeroforma arctica	50	CGMAP TSV TXT	Alex de Mendoza	Jul 15, 2024
GSE141609	Evolution of CpH methylation in vertebrate brains	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Branchiostoma lanceolatum Callorhinchus milii Danio rerio Gallus gallus Lethenteron camtschaticum Monodelphis domestica Octopus bimaculoides Ornithorhynchus anatinus	11	CGMAP TSV SRA Run Selector	Ryan Lister	Oct 26, 2020
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE43857	Patterns of Population Epigenomic Diversity in Arabidopsis thaliana (Methyl-Seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	927	TSV SRA Run Selector	Joseph R Ecker	Mar 05, 2013
GSE58217	Methylated DNA is over-represented in whole-genome bisulfite sequencing data	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	TSV SRA Run Selector	Robert J Schmitz	Sep 11, 2014
GSE67813	XCT is a novel regulator of chromatin functionally conserved across eukaryotes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	GFF TSV SRA Run Selector	Stacey Harmer	May 01, 2019
GSE79708	Unique cell-type specific patterns of DNA methylation in the root meristem (MethylC-seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	9	TSV SRA Run Selector	Joseph R Ecker	Mar 31, 2016
GSE79710	Unique cell-type specific patterns of DNA methylation in the root meristem	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	15	TSV	Joseph R Ecker	Mar 31, 2016
GSE79746	Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	21	TSV TXT SRA Run Selector	Robert J Schmitz	Jul 22, 2016
GSE80300	A comparative analysis of 5-azacytidine and zebularine induced DNA demethylation using whole-genome bisulfite sequencing	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	15	DIFF TSV SRA Run Selector	Robert J Schmitz	Jun 24, 2016
GSE93024	TET-mediated epimutagenesis of the Arabidopsis thaliana methylome	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	32	BED TSV TXT SRA Run Selector	Robert J Schmitz	Mar 02, 2018
GSE94298	Stable Inheritance of Spontaneous Epialleles in Arabidopsis thaliana	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	36	TSV SRA Run Selector	Robert J Schmitz	Jul 24, 2017
GSE94710	Dynamic DNA methylation reconfiguration during seed development and germination (MethylC-seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	24	TSV SRA Run Selector	Taiji Kawakatsu	Aug 31, 2017
GSE94712	Dynamic DNA methylation reconfiguration during seed development and germination	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	28	TSV	Taiji Kawakatsu	Aug 31, 2017
GSE108401	The Complex Architecture of Transgene Insertions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	39	BW TSV TXT SRA Run Selector	Joseph R Ecker	Mar 16, 2018
GSE118695	Methylome of the Arabidopsis mRNA export mutant aly1 and associated controls	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	11	TSV SRA Run Selector	R. Keith Slotkin	May 15, 2019
GSE118709	Methylome, transcriptome, RIP-seq and small RNA-seq of the Arabidopsis mRNA export mutant aly1 and associated controls	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	38	TSV TXT	R. Keith Slotkin	May 15, 2019
GSE120519	Natural depletion of H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	GFF TSV SRA Run Selector	Xiaoqi Feng	May 29, 2019
GSE122314	Epigenetic Control of a Multifunctional Stress Regulator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	126	TSV TXT SRA Run Selector	Joseph R Ecker	Aug 19, 2019