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59 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			TAR
GSE79154	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Oryza sativa	3	TAR SRA Run Selector	yiwen Deng	Mar 08, 2018
GSE79155	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [MeDIP-seq]	Methylation profiling by high throughput sequencing	Oryza sativa	2	TAR SRA Run Selector	yiwen Deng	Mar 08, 2018
GSE83993	Allele-Specific Non-CG Methylation Marks Domains of Active Chromatin in Mouse Brain	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	4	BW TAR TXT SRA Run Selector	Eran A Mukamel	Mar 30, 2017
GSE160457	An all-to-all approach to the identification of sequence-specific readers for epigenetic DNA modifications on cytosine	Other Methylation profiling by high throughput sequencing	Homo sapiens synthetic construct	20	TAR XLS SRA Run Selector	Heng Zhu	Dec 01, 2020
GSE213336	Basal cell extrusion primes pluripotent cells for differentiation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	35	BW TAR TSV	Helene Kretzmer	Mar 06, 2024
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE82022	Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	18	TAR TSV SRA Run Selector	Joseph R Ecker	Dec 20, 2016
GSE39777	Comparison of DNA methylation in human tissues	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	9	BED TAR	Janine LaSalle	Mar 28, 2013
GSE71640	Cooperation between H3K27me3 and non-CG methylation in epigenetic regulation of genes in rice.	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa Japonica Group	7	TAR TXT WIG SRA Run Selector	shaoli zhou	Dec 18, 2016
GSE181760	DNA Methylation Status in Mouse Liver Affected by Maternal High-fat, High-sucrose diet	Methylation profiling by high throughput sequencing	Mus musculus	2	TAR SRA Run Selector	Tomoyo Kawakubo-Yasukochi	Aug 18, 2021
GSE63330	DNA methylation in mammalian placentas	Methylation profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Equus caballus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus Saimiri boliviensis	20	TAR SRA Run Selector	Janine LaSalle	Aug 05, 2015
GSE67615	DNA methylation in the placentas of typically developing and autistic children	Methylation profiling by high throughput sequencing	Homo sapiens	51	TAR SRA Run Selector	Janine LaSalle	Apr 05, 2018
GSE130306	DNMT1 drives 4D genome rewiring during oncogene induced senescence	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW TAR TXT SRA Run Selector	Satish Sati	Mar 27, 2020
GSE209965	Decitabine-induced T cell remodeling facilitates a high antitumor response to PD-1 blockade therapy by promoting the expansion and effector function of CD8+ progenitor exhausted T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	24	BEDGRAPH TAR	Jing Nie	Jul 28, 2022
GSE192882	Direct reprogramming of human fetal retinal pigment epithelial cells into photoreceptor-like cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	26	COV TAR TXT	Guoping Fan	Oct 28, 2022
GSE285419	Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor	Methylation profiling by high throughput sequencing Other	Homo sapiens	16	CSV TAR	Benoit G. Bruneau	Jan 08, 2025
GSE204691	Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TAR	Chang Lu	Jul 04, 2023
GSE210576	Efficient generation of marmoset primordial germ cell-like cells using induced pluripotent stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Callithrix jacchus	31	H5 TAR TXT	keren cheng	Feb 17, 2023
GSE94866	Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the methylome	Methylation profiling by high throughput sequencing	Homo sapiens	26	CSV TAR SRA Run Selector	Edwin van den Oord	Feb 15, 2017
GSE95740	Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus neurons	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	60	TAR TXT SRA Run Selector	Eran A Mukamel	Jan 19, 2018