GEO Browser - GEO

Series

Samples

Platforms

DataSets

136 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			NARROWPEAK
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282	BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018
GSE127986	NRP histone chaperones promote the removal of histone variant H2A.Z	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	54	BROADPEAK BW NARROWPEAK TXT WIG SRA Run Selector	Zhenhui Zhong	Apr 29, 2020
GSE160285	Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	47	BW NARROWPEAK TXT WIG SRA Run Selector	Zhenhui Zhong	Jul 02, 2021
GSE171934	Molecular and biological functions of ZMP in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	60	BW NARROWPEAK TXT	Brandon Le	Apr 03, 2023
GSE188493	Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	101	BW NARROWPEAK RESULTS TXT WIG SRA Run Selector	Zhenhui Zhong	Oct 27, 2022
GSE197063	A gene silencing screen uncovers diverse tools for targeted gene repression in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	251	BW NARROWPEAK TXT	Zhenhui Zhong	Jan 20, 2023
GSE197747	N6-adenine DNA-immunoprecipitation-based genomic profiling in eukaryotes	Methylation profiling by high throughput sequencing	Arabidopsis thaliana Chlamydomonas reinhardtii Drosophila melanogaster	22	NARROWPEAK	Andrew Ben Stergachis	Feb 02, 2023
GSE204681	Arabidopsis TRB proteins function in H3K4me3 demethylation by recruiting the JMJ14 complex	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	108	BW NARROWPEAK TXT WIG	Zhenhui Zhong	Feb 12, 2023
GSE221679	The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	125	BW NARROWPEAK RESULTS TXT	Zhenhui Zhong	Jun 09, 2023
GSE225480	H1 restricts euchromatin-associated methylation pathways from heterochromatic encroachment	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	34	BW NARROWPEAK	Zhenhui Zhong	Sep 12, 2023
GSE236290	MBD2 couples DNA methylation to Transposable Elements silencing during male gametogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	146	BED BW MTX NARROWPEAK TSV TXT WIG	Shuya Wang	Jan 12, 2024
GSE245961	Histone H3 lysine 4 methylation recruits DNA demethylases to enforce gene expression in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	177	BW NARROWPEAK TXT WIG	Zhenhui Zhong	Jan 13, 2025
GSE269181	REM transcription factors and GDE1 shape the DNA methylation landscape through the recruitment of RNA Polymerase IV transcription complexes in Arabidopsis.	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	124	BW NARROWPEAK	Steven E. Jacobsen	Apr 12, 2025
GSE264346	Epigenetic Basis for the Establishment of Ruminal Tissue-Specific Functions	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Bos taurus	48	BEDGRAPH BW NARROWPEAK TXT	jing wang	Jun 01, 2024
GSE66504	Identification of N6-adenine methylation in C. elegans DNA	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	3	BW GFF NARROWPEAK SRA Run Selector	Lei Gu	May 05, 2015
GSE203105	Integrated mapping of the dog epigenome (MBD-seq)	Methylation profiling by high throughput sequencing	Canis lupus familiaris	33	NARROWPEAK	Je-Yoel Cho	Jan 30, 2023
GSE245614	DNA cytosine methylation suppresses meiotic recombination at the sex-determining region	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Chlamydomonas reinhardtii	42	BW NARROWPEAK	Xiuqi Gui	Aug 20, 2024
GSE175951	Methylome inheritance and enhancer dememorization construct an epigenetic gate safeguarding embryonic programs	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	108	BW CSV NARROWPEAK TXT SRA Run Selector	Wei Xie	Dec 29, 2021
GSE226180	The TET-BMP regulatory axis in pathogenesis of CFM [hMeDIPseq]	Methylation profiling by high throughput sequencing	Danio rerio	4	BW NARROWPEAK	Liangliang Wang	Mar 04, 2024
GSE226184	The TET-Sall4-BMP regulatory axis controls craniofacial cartilage development	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio	12	BW MTX NARROWPEAK TSV TXT	Liangliang Wang	Mar 04, 2024