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84 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			GFF
GSE163200	Extensive N4 cytosine methylation of Marchantia genes is essential for sperm function [1]	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Marchantia polymorpha subsp. ruderalis	34	BW GFF H5 JSON TSV SRA Run Selector	Xiaoqi Feng	Apr 09, 2025
GSE254154	Extensive N4 Cytosine Methylation is Essential for Marchantia Transcriptional Programming and Sperm Function	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Marchantia polymorpha subsp. ruderalis	36	BW GFF H5 JSON TSV	Xiaoqi Feng	Apr 09, 2025
GSE248075	DNA methylation dynamics in male germline development in Brassica rapa [RNA-seq/Bisulfite-seq]	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Brassica rapa	20	GFF TXT	Hongbo Gao	Sep 01, 2024
GSE176526	Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	14	BED GFF TXT SRA Run Selector	Xiaoqi Feng	Feb 15, 2024
GSE204837	A quantitative model of MET1-catalyzed establishment and epigenetic inheritance of DNA methylation	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	155	GFF	Daniel Zilberman	Nov 13, 2023
GSE212585	Genome-wide adenine N6-methylation map unveils epigenomic regulation of lipid accumulation in Nannochloropsis	Methylation profiling by high throughput sequencing	Nannochloropsis oceanica	15	GFF	Yanhai Gong	Sep 01, 2023
GSE233920	H2A.X promotes endosperm-specific DNA methylation in Arabidopsis thaliana	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	13	GFF	Tzung-Fu Hsieh	Aug 07, 2023
GSE197592	Mutating DDM1 in Physcomitrella patens disrupts DNA methylation with a minute effect on transposon regulation and development [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Physcomitrium patens	2	GFF	Ofir Griess	Mar 16, 2023
GSE198693	Mutating DDM1 in Physcomitrella patens disrupts DNA methylation with a minute effect on transposon regulation and development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Physcomitrium patens	8	GFF	Ofir Griess	Mar 16, 2023
GSE223459	Genomic methylation patterns in pre-meiotic gynoecia of wild-type and RdDM mutants of Arabidopsis	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	GFF	Jean-Philippe Vielle-Calzada	Mar 03, 2023
GSE220655	Endogenous Linear Plasmids lp28-4 and lp25 are Required for Infectivity and Restriction Protection in the Lyme Disease Spirochete Borrelia mayonii	Methylation profiling by high throughput sequencing	Borreliella mayonii	3	GFF	Sergei Nechaev	Feb 13, 2023
GSE217277	Loss of Linker Histone H1 in the Maternal Genome Influences DEMETER-Mediated Demethylation and Affects the Endosperm DNA Methylation Landscape (Bisulfite-Seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6	GFF	Tzung-Fu Hsieh	Nov 11, 2022
GSE217279	Loss of Linker Histone H1 in the Maternal Genome Influences DEMETER-Mediated Demethylation and Affects the Endosperm DNA Methylation Landscape	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	17	GFF	Tzung-Fu Hsieh	Nov 11, 2022
GSE208573	Molecular Epidemiology of Enterobacterales Resistant to Antibiotics of Last Resort in Pregnant Women in Labour at a Tertiary Hospital	Methylation profiling by high throughput sequencing Other	Enterobacter cloacae Enterobacter roggenkampii Klebsiella pneumoniae	5	GFF XLSX	John Osei Sekyere	Jul 20, 2022
GSE183785	Epigenetic inheritance mediates phenotypic evolution in natural populations	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	25	BW GFF SRA Run Selector	Jaemyung Choi	Jun 30, 2022
GSE199214	The steroid hormone estriol (E3) regulates epigenetic programming of fetal mouse brain and reproductive tract	Expression profiling by array Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	24	BEDGRAPH CEL CHP GFF	Yuping Zhou	Mar 31, 2022
GSE179796	Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	62	BW GFF SRA Run Selector	Jaemyung Choi	Dec 01, 2021
GSE161625	Nurse cell-derived small RNAs define paternal epigenetic inheritance in Arabidopsis	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	61	GFF SRA Run Selector	Xiaoqi Feng	Jul 01, 2021
GSE130122	Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa	74	GFF SRA Run Selector	Daniel Zilberman	Jun 29, 2021
GSE142051	Non-CG methylation is more potent than CG methylation in moss genome regulation [Ppatens BS-Seq]	Methylation profiling by high throughput sequencing	Physcomitrium patens	3	GFF SRA Run Selector	Katherine Domb	Dec 30, 2020