GEO Browser - GEO

Series

Samples

Platforms

DataSets

84 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			GFF
GSE69872	The Epigenomic Landscape of Prokaryotes	Methylation profiling by high throughput sequencing	Acetivibrio clariflavus 4-2a Acetivibrio thermocellus ATCC 27405 Acetivibrio thermocellus DSM 1313 Acetobacterium woodii DSM 1030 Acidobacteriaceae bacterium KBS 146 Acidobacteriaceae bacterium TAA 166 Acidovorax sp. JHL-3 Actinobacillus succinogenes 130Z Actinosynnema mirum DSM 43827 Agrobacterium fabrum str. C58 Akkermansia muciniphila ATCC BAA-835 Algoriphagus marincola HL-49 Alicyclobacillus macrosporangiidus CPP55 Allomeiothermus silvanus DSM 9946 Alteromonas sp. ALT199 Aminiphilus circumscriptus DSM 16581 Aminobacterium colombiense DSM 12261 Anoxybacillus flavithermus WK1 Arthrobacter sp. 31Y Asinibacterium sp. OR53 Bacillus spizizenii str. W23 Bacteroides sp. 14(A) Bernardetia litoralis DSM 6794 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 Bradyrhizobium elkanii USDA 76 Bryobacter aggregatus MPL3 Butyrivibrio sp. AE3003 Butyrivibrio sp. AE3004 Butyrivibrio sp. FCS014 Caldicoprobacter oshimai DSM 21659 Caldithrix abyssi DSM 13497 Calidithermus chliarophilus DSM 9957 Capnocytophaga ochracea DSM 7271 Cellulomonas sp. KRMCY2 Cellulophaga algicola DSM 14237 Cellulophaga lytica DSM 7489 Cellvibrionaceae bacterium 1162T.S.0a.05 Chloroflexus aggregans DSM 9485 Clostridioides difficile 630 Clostridioides mangenotii LM2 Clostridium algidicarnis Clostridium perfringens ATCC 13124 Clostridium sp. 12(A) Clostridium sp. ASBs410 Clostridium sp. KNHs205 Cohnella panacarvi Gsoil 349 Coraliomargarita akajimensis DSM 45221 Corynebacterium aurimucosum ATCC 700975 Cronobacter Desulfobacca acetoxidans DSM 11109 Desulfohalovibrio reitneri Desulforegula conservatrix Mb1Pa Desulfospira joergensenii DSM 10085 Desulfotignum balticum DSM 7044 Desulfurobacterium sp. TC5-1 Dinoroseobacter shibae DFL 12 = DSM 16493 Dyadobacter fermentans DSM 18053 Echinicola vietnamensis DSM 17526 Enterococcus faecalis 68A Enterococcus gallinarum Escherichia coli CFT073 Escherichia coli str. K-12 substr. MG1655 Eubacterium sp. AB3007 Exiguobacterium acetylicum DSM 20416 Exiguobacterium antarcticum DSM 14480 Exiguobacterium aurantiacum DSM 6208 Exiguobacterium chiriqhucha Exiguobacterium oxidotolerans JCM 12280 Fervidobacterium nodosum Rt17-B1 Flavimarina sp. Hel_I_48 Flavobacterium psychrophilum JIP02/86 Flexistipes sinusarabici DSM 4947 Galbibacter orientalis Geopsychrobacter electrodiphilus DSM 16401 Gillisia limnaea DSM 15749 Gillisia sp. JM1 Gracilinema caldarium DSM 7334 Halomicrobium katesii DSM 19301 Haloterrigena turkmenica DSM 5511 Hippea alviniae EP5-r Hippea sp. KM1 Hirschia baltica ATCC 49814 Holophaga foetida DSM 6591 Hydrogenovibrio crunogenus XCL-2 Hydrogenovibrio kuenenii DSM 12350 Hydrogenovibrio marinus DSM 11271 Hydrogenovibrio sp. MA2-6 Kallotenue papyrolyticum Kangiella aquimarina DSM 16071 Klebsiella aerogenes FGI35 Klebsiella oxytoca BRL6-2 Lachnobacterium bovis Lachnoclostridium phytofermentans KNHs212 Lachnoclostridium phytofermentans KNHs2132 Lachnospiraceae bacterium AC2012 Lachnospiraceae bacterium AC2029 Lachnospiraceae bacterium AC2031 Lacrimispora indolis DSM 755 Lacrimispora indolis SR3 Lactiplantibacillus plantarum Lactococcus lactis subsp. lactis Leptolyngbya sp. PCC 6406 Levilactobacillus brevis AG48 Limisalsivibrio acetivorans Maribacter sp. Hel_I_7 Marinithermus hydrothermalis DSM 14884 Mastigocladopsis repens PCC 10914 Mediterraneibacter gnavus AGR2154 Meiothermus ruber DSM 1279 Methanocaldococcus jannaschii DSM 2661 Methanocorpusculum labreanum Z Methanohalophilus mahii DSM 5219 Methanospirillum hungatei JF-1 Methanothermus fervidus DSM 2088 Methylobacter tundripaludum 21/22 Methylobacterium sp. 10 Methylobacterium sp. EUR3 AL-11 Methylocystis sp. LW5 Methylohalobius crimeensis 10Ki Methylophilaceae bacterium 11 Methylophilus sp. 1 Methylophilus sp. 42 Methylophilus sp. 5 Methylorubrum extorquens AM1 Methylotenera sp. 73s Methylotenera versatilis 79 Microbacterium sp. KROCY2 Mycoplasmopsis bovis PG45 Neisseria gonorrhoeae FA 1090 Neisseria meningitidis FAM18 Niabella soli DSM 19437 Nitratifractor salsuginis DSM 16511 Nitriliruptor alkaliphilus DSM 45188 Nocardia sp. BMG111209 Nocardia sp. BMG51109 Oceanicola sp. HL-35 Orenia marismortui DSM 5156 Oxalobacteraceae bacterium AB_14 Palaeococcus ferrophilus DSM 13482 Parabacteroides distasonis ATCC 8503 Patulibacter minatonensis DSM 18081 Pediococcus acidilactici AGR20 Pedobacter heparinus DSM 2366 Pelobacter seleniigenes DSM 18267 Peptostreptococcaceae bacterium VA2 Persephonella Phaeobacter inhibens DSM 17395 Phocaeicola salanitronis DSM 18170 Planctopirus limnophila DSM 3776 Polaribacter sp. Hel_I_88 Polaromonas sp. EUR3 1.2.1 Polycyclovorans algicola TG408 Pontibacter actiniarum DSM 19842 Prevotella sp. 10(H) Prevotella sp. HUN102 Pseudacidobacterium ailaaui Pseudarthrobacter chlorophenolicus A6 Pseudobutyrivibrio ruminis HUN009 Pseudofrankia sp. DC12 Pseudomonas aeruginosa NCAIM B.001380 Psychrilyobacter atlanticus DSM 19335 Pyrococcus horikoshii OT3 Rhizobium etli CIAT 652 Rhodopseudomonas palustris CGA009 Rikenella microfusus DSM 15922 Robinsoniella sp. KNHs210 Ruminiclostridium josui JCM 17888 Ruminococcaceae bacterium AE2021 Ruminococcus albus AD2013 Ruminococcus flavefaciens AE3010 Ruminococcus sp. HUN007 Ruminococcus sp. NK3A76 Saccharomonospora viridis DSM 43017 Salmonella bongori NCTC 12419 Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Sebaldella termitidis ATCC 33386 Sedimentitalea nanhaiensis DSM 24252 Sediminibacter sp. Hel_I_10 Sediminispirochaeta smaragdinae DSM 11293 Selenomonas ruminantium AC2024 Selenomonas sp. AB3002 Shewanella woodyi ATCC 51908 Sinorhizobium medicae WSM1115 Solidesulfovibrio cf. magneticus IFRC170 Solitalea canadensis DSM 3403 Sphaerobacter thermophilus DSM 20745 Sphingomonas melonis C3 Spirochaeta africana DSM 8902 Spirochaeta thermophila DSM 6578 Sporocytophaga myxococcoides DSM 11118 Staphylococcus aureus subsp. aureus USA300_TCH1516 Staphylococcus epidermidis AG42 Staphylothermus marinus F1 Streptobacillus moniliformis DSM 12112 Streptococcus equinus Streptomyces sp. WMMB 714 Streptosporangium roseum DSM 43021 Stutzerimonas stutzeri RCH2 Sulfolobus acidocaldarius DSM 639 Sulfurimonas denitrificans DSM 1251 Sulfurospirillum barnesii SES-3 Syntrophobotulus glycolicus DSM 8271 Syntrophothermus lipocalidus DSM 12680 Teredinibacter purpureus Teredinibacter turnerae Thermacetogenium phaeum DSM 12270 Thermanaerovibrio acidaminovorans DSM 6589 Thermoanaerobacter sp. X514 Thermobacillus composti KWC4 Thermogemmatispora carboxidivorans Thermoplasma acidophilum DSM 1728 Thermoplasma volcanium GSS1 Thermosipho melanesiensis BI429 Thioalkalivibrio sp. ARh3 Thiobacillus denitrificans ATCC 25259 Thiomicrospira pelophila DSM 1534 Thiomonas sp. FB-6 Tolumonas lignilytica Treponema denticola ATCC 35405 Treponema succinifaciens DSM 2489 Veillonella parvula DSM 2008 Verrucomicrobia bacterium LP2A Xanthobacter sp. 91 Xenorhabdus nematophila ATCC 19061 Xylella fastidiosa Temecula1 Zymomonas mobilis subsp. pomaceae ATCC 29192	237	CSV GFF SRA Run Selector	Matthew James Blow	Jan 20, 2016
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Rhodonia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE116629	DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Apis mellifera	29	GFF TXT SRA Run Selector	Assaf Zemach	Oct 01, 2019
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE15922	Genome-wide demethylation of Arabidopsis endosperm	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Jun 16, 2009
GSE38935	Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	GFF SRA Run Selector	Toshiro Nishimura	Sep 21, 2012
GSE39045	Deposition of histone variant H2A.Z within gene bodies regulates responsive genes	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Arabidopsis thaliana	38	GFF SRA Run Selector	Toshiro Nishimura	Dec 13, 2012
GSE40501	Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	GFF SRA Run Selector	Joseph Calarco	Aug 31, 2012
GSE41302	DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	33	GFF SRA Run Selector	Toshiro Nishimura	Apr 17, 2013
GSE46428	High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	GFF TXT SRA Run Selector	Desheng Gong	May 01, 2013
GSE67813	XCT is a novel regulator of chromatin functionally conserved across eukaryotes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	GFF TSV SRA Run Selector	Stacey Harmer	May 01, 2019
GSE68860	Genome-wide single-molecule sequencing of 6-methyladenine in eukaryotes	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Auricularia delicata Caenorhabditis elegans Chlamydomonas reinhardtii Drosophila melanogaster Nannochloropsis oceanica Saccharomyces cerevisiae	11	BW CSV GFF SRA Run Selector	Denis Tolkunov	Sep 01, 2017
GSE76648	Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [BS-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	GFF SRA Run Selector	Jean Molinier	Aug 17, 2016
GSE76651	Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	5	GFF	Jean Molinier	Aug 17, 2016
GSE81596	DNA N6-adenine methylation in Arabidopsis thaliana (methylation)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	1	GFF SRA Run Selector	Hao Yu	Apr 16, 2018
GSE81597	DNA N6-adenine methylation in Arabidopsis thaliana	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	GFF TXT	Hao Yu	Apr 16, 2018
GSE85975	DNA methylation dynamics during early plant life	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH GFF SRA Run Selector	Daniel Bouyer	Aug 23, 2017
GSE86583	Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	20	GFF XLSX SRA Run Selector	Xiaoqi Feng	Dec 12, 2017
GSE87170	DNA methylation inheritance across generations	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	GFF SRA Run Selector	Xiaoqi Feng	Dec 13, 2016
GSE89789	DNA demethylation is initiated in the central cells of Arabidopsis and rice	Methylation profiling by high throughput sequencing	Arabidopsis thaliana Oryza sativa	5	GFF SRA Run Selector	Xiaoqi Feng	Nov 30, 2016