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342 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			CSV
GSE75533	Whole genome DNA methylation analysis of human CD8 T cell specific for the Yellow fever virus vaccine	Methylation profiling by high throughput sequencing	Homo sapiens	4	CSV SRA Run Selector	Rama S Akondy	Dec 13, 2017
GSE275598	Methylation profiling of plasma cell-free DNA in pediatric brain tumor patients	Methylation profiling by high throughput sequencing	Homo sapiens	93	CSV	Shejuan An	Sep 30, 2024
GSE104366	Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Dicentrarchus labrax	16	CSV TXT SRA Run Selector	Dafni Anastasiadi	Jul 02, 2018
GSE242355	MoTrPAC - Endurance Exercise Training Study In 6 Months Old Rats [RRBS]	Methylation profiling by high throughput sequencing	Rattus norvegicus	416	COV CSV	Euan Ashley	Sep 30, 2023
GSE140842	Alterations of 5-Hydroxymethylcytosines in Circulating Cell-free DNA Reflect Retinopathy in Type 2 Diabetes	Methylation profiling by high throughput sequencing	Homo sapiens	70	CSV SRA Run Selector	Issam Awad	Nov 20, 2021
GSE155228	Alterations of 5-hydroxymethylation in circulating cell-free DNA reflect molecular distinctions of subtypes of non-Hodgkin lymphoma	Methylation profiling by high throughput sequencing	Homo sapiens	73	CSV SRA Run Selector	Issam Awad	Feb 17, 2021
GSE199812	Partitioned Usage of Chromatin Remodelers by Nucleosome Displacing Factors	Methylation profiling by high throughput sequencing	Saccharomyces cerevisiae	5	CSV TXT	Lu Bai	Apr 06, 2022
GSE112438	Cell type purification by single-cell transcriptome-trained sorting	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio Homo sapiens	73	COV CSV TXT SRA Run Selector	Aditya Barve	Oct 07, 2019
GSE89467	B cell differentiation is limited by de novo DNA methylation [RRBS]	Methylation profiling by high throughput sequencing	Mus musculus	18	CSV SRA Run Selector	Benjamin G Barwick	Dec 31, 2017
GSE225372	Distinct disease mutations in DNMT3A result in a spectrum of behavioral, epigenetic, and transcriptional disruptions	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	100	BED CSV XLSX	Diana Christian Beard	Nov 08, 2023
GSE142310	LY75 ablation mediates mesenchymal-epithelial transition (MET) in epithelial ovarian cancer (EOC) cells associated with aberrant DNA methylation alterations implicated in EOC dissemination	Methylation profiling by high throughput sequencing	Homo sapiens	4	CSV SRA Run Selector	Delphine Bernard	Mar 30, 2020
GSE191051	Sperm heterogeneity and DNMT/TET activities do not account for sperm DNA methylation changes observed in the epididymis	Methylation profiling by high throughput sequencing	Mus musculus	12	CSV	Delphine Bernard	Mar 10, 2022
GSE154206	Epigenomic (RRBS) analyses in brains of exposed F0 zebrafish and their unexposed F1 and F2 offspring after early-life exposure to permethrin 10 microg/L	Methylation profiling by high throughput sequencing	Danio rerio	47	CSV TXT SRA Run Selector	Mélanie Blanc	Jul 01, 2021
GSE69872	The Epigenomic Landscape of Prokaryotes	Methylation profiling by high throughput sequencing	Acetivibrio clariflavus 4-2a Acetivibrio thermocellus ATCC 27405 Acetivibrio thermocellus DSM 1313 Acetobacterium woodii DSM 1030 Acidobacteriaceae bacterium KBS 146 Acidobacteriaceae bacterium TAA 166 Acidovorax sp. JHL-3 Actinobacillus succinogenes 130Z Actinosynnema mirum DSM 43827 Agrobacterium fabrum str. C58 Akkermansia muciniphila ATCC BAA-835 Algoriphagus marincola HL-49 Alicyclobacillus macrosporangiidus CPP55 Allomeiothermus silvanus DSM 9946 Alteromonas sp. ALT199 Aminiphilus circumscriptus DSM 16581 Aminobacterium colombiense DSM 12261 Anoxybacillus flavithermus WK1 Arthrobacter sp. 31Y Asinibacterium sp. OR53 Bacillus spizizenii str. W23 Bacteroides sp. 14(A) Bernardetia litoralis DSM 6794 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 Bradyrhizobium elkanii USDA 76 Bryobacter aggregatus MPL3 Butyrivibrio sp. AE3003 Butyrivibrio sp. AE3004 Butyrivibrio sp. FCS014 Caldicoprobacter oshimai DSM 21659 Caldithrix abyssi DSM 13497 Calidithermus chliarophilus DSM 9957 Capnocytophaga ochracea DSM 7271 Cellulomonas sp. KRMCY2 Cellulophaga algicola DSM 14237 Cellulophaga lytica DSM 7489 Cellvibrionaceae bacterium 1162T.S.0a.05 Chloroflexus aggregans DSM 9485 Clostridioides difficile 630 Clostridioides mangenotii LM2 Clostridium algidicarnis Clostridium perfringens ATCC 13124 Clostridium sp. 12(A) Clostridium sp. ASBs410 Clostridium sp. KNHs205 Cohnella panacarvi Gsoil 349 Coraliomargarita akajimensis DSM 45221 Corynebacterium aurimucosum ATCC 700975 Cronobacter Desulfobacca acetoxidans DSM 11109 Desulfohalovibrio reitneri Desulforegula conservatrix Mb1Pa Desulfospira joergensenii DSM 10085 Desulfotignum balticum DSM 7044 Desulfurobacterium sp. TC5-1 Dinoroseobacter shibae DFL 12 = DSM 16493 Dyadobacter fermentans DSM 18053 Echinicola vietnamensis DSM 17526 Enterococcus faecalis 68A Enterococcus gallinarum Escherichia coli CFT073 Escherichia coli str. K-12 substr. MG1655 Eubacterium sp. AB3007 Exiguobacterium acetylicum DSM 20416 Exiguobacterium antarcticum DSM 14480 Exiguobacterium aurantiacum DSM 6208 Exiguobacterium chiriqhucha Exiguobacterium oxidotolerans JCM 12280 Fervidobacterium nodosum Rt17-B1 Flavimarina sp. Hel_I_48 Flavobacterium psychrophilum JIP02/86 Flexistipes sinusarabici DSM 4947 Galbibacter orientalis Geopsychrobacter electrodiphilus DSM 16401 Gillisia limnaea DSM 15749 Gillisia sp. JM1 Gracilinema caldarium DSM 7334 Halomicrobium katesii DSM 19301 Haloterrigena turkmenica DSM 5511 Hippea alviniae EP5-r Hippea sp. KM1 Hirschia baltica ATCC 49814 Holophaga foetida DSM 6591 Hydrogenovibrio crunogenus XCL-2 Hydrogenovibrio kuenenii DSM 12350 Hydrogenovibrio marinus DSM 11271 Hydrogenovibrio sp. MA2-6 Kallotenue papyrolyticum Kangiella aquimarina DSM 16071 Klebsiella aerogenes FGI35 Klebsiella oxytoca BRL6-2 Lachnobacterium bovis Lachnoclostridium phytofermentans KNHs212 Lachnoclostridium phytofermentans KNHs2132 Lachnospiraceae bacterium AC2012 Lachnospiraceae bacterium AC2029 Lachnospiraceae bacterium AC2031 Lacrimispora indolis DSM 755 Lacrimispora indolis SR3 Lactiplantibacillus plantarum Lactococcus lactis subsp. lactis Leptolyngbya sp. PCC 6406 Levilactobacillus brevis AG48 Limisalsivibrio acetivorans Maribacter sp. Hel_I_7 Marinithermus hydrothermalis DSM 14884 Mastigocladopsis repens PCC 10914 Mediterraneibacter gnavus AGR2154 Meiothermus ruber DSM 1279 Methanocaldococcus jannaschii DSM 2661 Methanocorpusculum labreanum Z Methanohalophilus mahii DSM 5219 Methanospirillum hungatei JF-1 Methanothermus fervidus DSM 2088 Methylobacter tundripaludum 21/22 Methylobacterium sp. 10 Methylobacterium sp. EUR3 AL-11 Methylocystis sp. LW5 Methylohalobius crimeensis 10Ki Methylophilaceae bacterium 11 Methylophilus sp. 1 Methylophilus sp. 42 Methylophilus sp. 5 Methylorubrum extorquens AM1 Methylotenera sp. 73s Methylotenera versatilis 79 Microbacterium sp. KROCY2 Mycoplasmopsis bovis PG45 Neisseria gonorrhoeae FA 1090 Neisseria meningitidis FAM18 Niabella soli DSM 19437 Nitratifractor salsuginis DSM 16511 Nitriliruptor alkaliphilus DSM 45188 Nocardia sp. BMG111209 Nocardia sp. BMG51109 Oceanicola sp. HL-35 Orenia marismortui DSM 5156 Oxalobacteraceae bacterium AB_14 Palaeococcus ferrophilus DSM 13482 Parabacteroides distasonis ATCC 8503 Patulibacter minatonensis DSM 18081 Pediococcus acidilactici AGR20 Pedobacter heparinus DSM 2366 Pelobacter seleniigenes DSM 18267 Peptostreptococcaceae bacterium VA2 Persephonella Phaeobacter inhibens DSM 17395 Phocaeicola salanitronis DSM 18170 Planctopirus limnophila DSM 3776 Polaribacter sp. Hel_I_88 Polaromonas sp. EUR3 1.2.1 Polycyclovorans algicola TG408 Pontibacter actiniarum DSM 19842 Prevotella sp. 10(H) Prevotella sp. HUN102 Pseudacidobacterium ailaaui Pseudarthrobacter chlorophenolicus A6 Pseudobutyrivibrio ruminis HUN009 Pseudofrankia sp. DC12 Pseudomonas aeruginosa NCAIM B.001380 Psychrilyobacter atlanticus DSM 19335 Pyrococcus horikoshii OT3 Rhizobium etli CIAT 652 Rhodopseudomonas palustris CGA009 Rikenella microfusus DSM 15922 Robinsoniella sp. KNHs210 Ruminiclostridium josui JCM 17888 Ruminococcaceae bacterium AE2021 Ruminococcus albus AD2013 Ruminococcus flavefaciens AE3010 Ruminococcus sp. HUN007 Ruminococcus sp. NK3A76 Saccharomonospora viridis DSM 43017 Salmonella bongori NCTC 12419 Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Sebaldella termitidis ATCC 33386 Sedimentitalea nanhaiensis DSM 24252 Sediminibacter sp. Hel_I_10 Sediminispirochaeta smaragdinae DSM 11293 Selenomonas ruminantium AC2024 Selenomonas sp. AB3002 Shewanella woodyi ATCC 51908 Sinorhizobium medicae WSM1115 Solidesulfovibrio cf. magneticus IFRC170 Solitalea canadensis DSM 3403 Sphaerobacter thermophilus DSM 20745 Sphingomonas melonis C3 Spirochaeta africana DSM 8902 Spirochaeta thermophila DSM 6578 Sporocytophaga myxococcoides DSM 11118 Staphylococcus aureus subsp. aureus USA300_TCH1516 Staphylococcus epidermidis AG42 Staphylothermus marinus F1 Streptobacillus moniliformis DSM 12112 Streptococcus equinus Streptomyces sp. WMMB 714 Streptosporangium roseum DSM 43021 Stutzerimonas stutzeri RCH2 Sulfolobus acidocaldarius DSM 639 Sulfurimonas denitrificans DSM 1251 Sulfurospirillum barnesii SES-3 Syntrophobotulus glycolicus DSM 8271 Syntrophothermus lipocalidus DSM 12680 Teredinibacter purpureus Teredinibacter turnerae Thermacetogenium phaeum DSM 12270 Thermanaerovibrio acidaminovorans DSM 6589 Thermoanaerobacter sp. X514 Thermobacillus composti KWC4 Thermogemmatispora carboxidivorans Thermoplasma acidophilum DSM 1728 Thermoplasma volcanium GSS1 Thermosipho melanesiensis BI429 Thioalkalivibrio sp. ARh3 Thiobacillus denitrificans ATCC 25259 Thiomicrospira pelophila DSM 1534 Thiomonas sp. FB-6 Tolumonas lignilytica Treponema denticola ATCC 35405 Treponema succinifaciens DSM 2489 Veillonella parvula DSM 2008 Verrucomicrobia bacterium LP2A Xanthobacter sp. 91 Xenorhabdus nematophila ATCC 19061 Xylella fastidiosa Temecula1 Zymomonas mobilis subsp. pomaceae ATCC 29192	237	CSV GFF SRA Run Selector	Matthew James Blow	Jan 20, 2016
GSE285419	Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor	Methylation profiling by high throughput sequencing Other	Homo sapiens	16	CSV TAR	Benoit G. Bruneau	Jan 08, 2025
GSE115308	DNA Methylation by Restriction Modification Systems Affects the Global Transcriptome Profile in Borrelia burgdorferi.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Borreliella burgdorferi	11	BW CSV GFF SRA Run Selector	Tim Casselli	Jun 05, 2018
GSE270454	Epigenetic dysregulation of transposable elements in cognitive impairment and Alzheimer’s disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	135	CSV TXT XLSX	Alyssa N Cavalier	Aug 01, 2024
GSE107621	Global hypomethylation mediated changes regulate constitutive PD-L1 expression in melanoma [RRBS]	Methylation profiling by high throughput sequencing	Homo sapiens	12	CSV XLSX SRA Run Selector	Aniruddha Chatterjee	May 24, 2018
GSE110057	CpG DNA methylation is altered in the PKD1 gene body but not promoter in autosomal dominant polycystic kidney disease	Methylation profiling by high throughput sequencing	Homo sapiens	7	CSV SRA Run Selector	Aniruddha Chatterjee	Dec 01, 2019
GSE142664	Extensive DNA methylation variation across a single ADPKD kidney	Methylation profiling by high throughput sequencing	Homo sapiens	8	CSV SRA Run Selector	Aniruddha Chatterjee	Jan 14, 2020