GEO Browser - GEO

Series

Samples

Platforms

DataSets

924 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			BW
GSE140050	Non-canonical base modifications of bacterial origin in a eukaryotic genome [MeDIP-seq]	Methylation profiling by high throughput sequencing	Adineta vaga	4	BED BW SRA Run Selector	Irina Arkhipova	Jan 07, 2022
GSE140052	Non-canonical base modifications of bacterial origin in a eukaryotic genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Adineta vaga	17	BED BW	Irina Arkhipova	Jan 07, 2022
GSE218880	5-methyl cytosine profile and chromatin profile of Anthoceros agrestis	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anthoceros agrestis	20	BEDGRAPH BROADPEAK BW TXT	Tetsuya Hisanaga	Nov 10, 2023
GSE230463	The Effects of Low Temperature on the Global Increase of N6-methyldeoxyadenosine in Arabidopsis thaliana and Rice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis Oryza sativa	22	BW XLSX	mao fei	Jun 19, 2023
GSE67798	A novel BRAT1–BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis [BS-Seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	BW SRA Run Selector	huanwei huang	Apr 14, 2015
GSE67799	A novel BRAT1-BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	BW	huanwei huang	Apr 14, 2015
GSE68860	Genome-wide single-molecule sequencing of 6-methyladenine in eukaryotes	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Auricularia delicata Caenorhabditis elegans Chlamydomonas reinhardtii Drosophila melanogaster Nannochloropsis oceanica Saccharomyces cerevisiae	11	BW CSV GFF SRA Run Selector	Denis Tolkunov	Sep 01, 2017
GSE78090	Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BW	Xiuying Liu	May 31, 2016
GSE80302	The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	5	BW SRA Run Selector	Yongqiang Li	Apr 15, 2016
GSE80303	The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	13	BW	Yongqiang Li	Apr 15, 2016
GSE80370	Two components of the RNA-directed DNA methylation pathway associate with MORC6 and silence loci targeted by MORC6 in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	13	BW DIFF SRA Run Selector	Yongqiang Li	Apr 19, 2016
GSE81407	Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	36	BW CGMAP TXT SRA Run Selector	Pao-Yang Chen	Nov 02, 2017
GSE94022	Profiling of 5-methylcytosine (m5C) methylation in Arabidopsis thaliana wild-type	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	BW SRA Run Selector	Hao Yu	Oct 05, 2017
GSE94065	5-Methylcytosine RNA methylation in Arabidopsis thaliana	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	BW TXT	Hao Yu	Oct 05, 2017
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017
GSE98214	Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	35	BEDGRAPH BW XLS SRA Run Selector	Yusheng Zhao	Apr 25, 2018
GSE98872	Comparative Epigenomics Reveals Hierarchical Regulation of Non-CG Methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	BW TXT SRA Run Selector	C. Jake Harris	Dec 31, 2017
GSE103924	Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands (HTS)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	28	BIGWIG BW XLSX SRA Run Selector	Christophe Laloi	Sep 12, 2018
GSE104456	Profiling of cytosine DNA-methylation in the Arabidopsis CAF-1 mutant fas2	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	BW SRA Run Selector	Minerva Susana Trejo Arellano	Mar 26, 2018
GSE108401	The Complex Architecture of Transgene Insertions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	39	BW TSV TXT SRA Run Selector	Joseph R Ecker	Mar 16, 2018