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1043 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			BED
GSE14254	Global Mapping of Histone H3 K4 and K27 Trimethylation: Lineage Fate Determination of Differentiating CD4+ T Cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Weiqun Peng	Jan 21, 2009
GSE15007	Digital DNA methylation analysis of stem cell reprogramming by targeted bisulfite sequencing	Methylation profiling by high throughput sequencing	Homo sapiens	12	BED TXT	Kun Zhang	Apr 27, 2009
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE17001	High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED TXT SRA Run Selector	Emily Hodges	Jul 08, 2009
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17554	Nucleosome deposition and DNA methylation at coding region boundaries	Methylation profiling by high throughput sequencing	Homo sapiens	1	BED SRA Run Selector	Jung Kyoon Choi	Aug 11, 2009
GSE17642	Genome-wide mapping of Eset-binding sites and H3K9me3 state in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	3	BED TXT SRA Run Selector	Mikael Huss	Nov 04, 2009
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE19937	Human embryonic stem cells HELP-tagging cytosine methylation data (Albert Einstein College of Medicine)	Methylation profiling by high throughput sequencing	Homo sapiens	4	BED SRA Run Selector	John Greally	Apr 12, 2010
GSE21242	Chromatin and Sequence Features that Define the Fine and Gross Structure of Genomics Methylation Patterns	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BED TXT SRA Run Selector	John R. Edwards	Apr 16, 2010
GSE25898	Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals (meDIP)	Methylation profiling by high throughput sequencing	Mus musculus	4	BED SRA Run Selector	naomi habib	Jan 14, 2011
GSE27584	DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha	Methylation profiling by high throughput sequencing	Homo sapiens	202	BED BEDRRBS SRA Run Selector	ENCODE DCC	Mar 01, 2011
GSE24841	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (ChIP/DIP-Seq data)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	17	BED SRA Run Selector	Kristine Williams	Apr 13, 2011
GSE24843	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	32	BED CEL	Kristine Williams	Apr 13, 2011
GSE28500	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BED CEL	Feizhen Wu	Apr 21, 2011
GSE28532	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells (ChIP-seq data)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	14	BED SRA Run Selector	Feizhen Wu	Apr 21, 2011
GSE28533	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells (bisulfite sequencing data)	Methylation profiling by high throughput sequencing	Mus musculus	4	BED TXT SRA Run Selector	Feizhen Wu	Apr 21, 2011
GSE28682	Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells	Methylation profiling by high throughput sequencing Other	Mus musculus	9	BED SRA Run Selector	William Abraham Pastor	Apr 21, 2011
GSE29251	Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	13	BAM BED SRA Run Selector	Assam El-Osta	Jun 01, 2011