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1045 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			BED
GSE14254	Global Mapping of Histone H3 K4 and K27 Trimethylation: Lineage Fate Determination of Differentiating CD4+ T Cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Weiqun Peng	Jan 21, 2009
GSE15007	Digital DNA methylation analysis of stem cell reprogramming by targeted bisulfite sequencing	Methylation profiling by high throughput sequencing	Homo sapiens	12	BED TXT	Kun Zhang	Apr 27, 2009
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17001	High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED TXT SRA Run Selector	Emily Hodges	Jul 08, 2009
GSE17554	Nucleosome deposition and DNA methylation at coding region boundaries	Methylation profiling by high throughput sequencing	Homo sapiens	1	BED SRA Run Selector	Jung Kyoon Choi	Aug 11, 2009
GSE17642	Genome-wide mapping of Eset-binding sites and H3K9me3 state in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	3	BED TXT SRA Run Selector	Mikael Huss	Nov 04, 2009
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE19937	Human embryonic stem cells HELP-tagging cytosine methylation data (Albert Einstein College of Medicine)	Methylation profiling by high throughput sequencing	Homo sapiens	4	BED SRA Run Selector	John Greally	Apr 12, 2010
GSE20898	Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	53	BED BEDGRAPH RPKM SRA Run Selector	Brian J Abraham	Aug 26, 2011
GSE21242	Chromatin and Sequence Features that Define the Fine and Gross Structure of Genomics Methylation Patterns	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BED TXT SRA Run Selector	John R. Edwards	Apr 16, 2010
GSE23913	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	Methylation profiling by high throughput sequencing	Xenopus tropicalis	4	BED SRA Run Selector	Ozren Bogdanovic	Jun 23, 2011
GSE24841	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (ChIP/DIP-Seq data)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	17	BED SRA Run Selector	Kristine Williams	Apr 13, 2011
GSE24843	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	32	BED CEL	Kristine Williams	Apr 13, 2011
GSE25898	Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals (meDIP)	Methylation profiling by high throughput sequencing	Mus musculus	4	BED SRA Run Selector	naomi habib	Jan 14, 2011
GSE25930	Large-scale methylation domains mark a functional subset of neuronally expressed genes	Methylation profiling by high throughput sequencing	Homo sapiens	2	BED SRA Run Selector	Janine LaSalle	Jun 23, 2011
GSE26592	Neighboring genomic regions influence differential methylation patterns of CpG islands in endometrial and breast cancers	Methylation profiling by high throughput sequencing	Homo sapiens	243	BED TXT SRA Run Selector	Fei Gu	Jan 11, 2012
GSE27322	de novo DNA Methylation Balances Hematopoietic Stem Cell Self-Renewal and Differentiation	Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	10	BAM BED CEL SRA Run Selector	deqiang sun	Sep 30, 2011
GSE27432	Genomic distribution and inter-sample variation of non-CG methylation across human cell types	Methylation profiling by high throughput sequencing	Homo sapiens	37	BED	Michael Johannes Ziller	Sep 01, 2011