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66 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Methylation profiling by high throughput sequencing			BED
GSE179178	m6A MeRIP-seq of skeletal muscle during innervation and denervation	Methylation profiling by high throughput sequencing	Mus musculus	8	BED BW SRA Run Selector	Yuantong Liu	Sep 26, 2021
GSE159043	H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	23	BED BROADPEAK BW COV	Falong Lu	Jun 27, 2022
GSE162903	Base-editor-mediated multiplexed inactivation of DNA methyltransferases reveals essential roles of miRNAs in mouse gastrulation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	144	BED CSV TXT SRA Run Selector	Jiansen Lu	Apr 23, 2023
GSE147879	Two competing mechanisms of DNMT3A recruitment regulate the dynamics of de novo DNA methylation at CpG islands	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	78	BED BEDGRAPH BW SRA Run Selector	Jacek Majewski	May 13, 2021
GSE179919	The RNA m6A binding protein YTHDF2 promotes the B cell to plasma cell transition	Methylation profiling by high throughput sequencing Other	Mus musculus	10	BED TXT SRA Run Selector	Louise Matheson	Jul 13, 2021
GSE266926	Rescuing DNMT1 Fails to Fully Reverse the Molecular and Functional Repercussions of Its Loss in Mouse Embryonic Stem Cells [EM-seq]	Methylation profiling by high throughput sequencing	Mus musculus	9	BED TXT	Serge McGraw	Feb 10, 2025
GSE267053	Rescuing DNMT1 Fails to Fully Reverse the Molecular and Functional Repercussions of Its Loss in Mouse Embryonic Stem Cells.	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	96	BED BW TXT	Serge McGraw	Feb 10, 2025
GSE161570	KMT2C Loss Promotes Small Cell Lung Cancer Metastasis through DNMT3A-mediated Epigenetic Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	55	BED BW CGMAP CSV GAPPEDPEAK TAR XLSX SRA Run Selector	Xaingyu Pan	Feb 23, 2022
GSE244698	Gestational diabetes in mice induces hematopoietic memory that impacts the long-term health of the offspring	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	20	BED COV TXT	Soona Shin	Nov 13, 2023
GSE221470	TET activity propagates transcriptional memory through embryonic dormancy	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	266	BED BW	Maximilian Stötzel	Mar 19, 2024
GSE267627	Single-cell m6A profiling in the mouse brain uncovers cell type-specific RNA methylomes and age-dependent differential methylation [GLORI]	Methylation profiling by high throughput sequencing	Mus musculus	4	BED	Matthew Tegowski	Sep 24, 2024
GSE275545	A Multi-omics Study of Epigenetic Changes in Type II Alveolar Cells of A/J Mice Exposed to Environmental Tobacco Smoke	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	72	BED CSV TXT	Natalia Tretyakova	Sep 18, 2024
GSE202065	Targeting the ADPKD methylome using nanoparticle-mediated combination therapy	Methylation profiling by high throughput sequencing	Mus musculus	12	BED	Annie Trinh	May 10, 2023
GSE214830	Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation [oxWGBS]	Methylation profiling by high throughput sequencing	Mus musculus	16	BED BW TXT	Bernard Klaas van der Veer	Apr 12, 2023
GSE218001	Gut microbiota rewires host mRNA m6A epitranscriptomic landscape via bile acid metabolism	Methylation profiling by high throughput sequencing	Mus musculus	57	BED	Xiaoyun Wang	Apr 21, 2024
GSE200185	Circulating cell-free, methylated DNA reveals tissue-specific, cellular damage from radiation treatment [Mouse Reference Cell-type MCC-seq]	Methylation profiling by high throughput sequencing	Mus musculus	8	BED BETA CSI PAT TBI	Anton Wellstein	Jul 24, 2023
GSE164047	Arginine methylation of METTL14 promotes RNA N6-methyladenosine modification	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	14	BED TXT SRA Run Selector	Shan Xiao	May 14, 2021
GSE246632	Single-Molecule Direct RNA Sequencing Reveals the Shaping of Epitranscriptome Across Multiple Species	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Chlamydomonas reinhardtii Homo sapiens Mus musculus Oryza sativa	13	BED	Yingyuan Xie	Apr 29, 2025
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE146250	Control of Foxp3 induction and maintenance by sequential histone acetylation and DNA demethylation	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	78	BED BW TSV	Beisi Xu	Dec 14, 2021