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80 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Methylation profiling by high throughput sequencing			BW
GSE212094	WGBS-seq, CUTANDRUN, ATAC-seq of urothelial stem cells isolated from Juvenile Naïve C3H/HeN mice	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BW TXT	Daofeng Li	Aug 21, 2023
GSE212715	Tet2 and Tet3 mediated active cytosine hydroxymethylation in Six2 progenitor cells is critical for nephron progenitor differentiation and nephron endowment	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	4	BW MTX TSV	Xiujie Liang	Nov 23, 2022
GSE213398	Tet2 regulates Sin3a recruitment at active enhancers in embryonic stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	28	BW CSV	Meelad M Dawlaty	Jun 23, 2023
GSE213901	Whole-genome bisulfite sequencing and histone 3.3 ChIP-seq of microdissected developing mouse lens	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BED BW	William Chang	Sep 24, 2022
GSE214845	Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	150	BIGWIG BW MTX NARROWPEAK RDS TSV TXT	Bernard Klaas van der Veer	Apr 12, 2023
GSE218867	ZBTB24 is a conserved multifaceted transcription factor at genes and centromeres that governs the DNA methylation state and expression of satellite repeats	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	40	BW IGV	Guillaume Velasco	Jan 30, 2025
GSE224563	DNA methylation in the mouse cochlea promotes maturation of supporting cells and contributes to the failure of hair cell regeneration	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED BW COV H5 H5SEURAT MTX RDS TSV	John Duc Nguyen	Feb 07, 2023
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE226689	Revisiting chromatin packaging in mouse sperm	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BW MCOOL TSV	Qiangzong Yin	Mar 10, 2023
GSE228519	Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	41	BW HIC TDF	Laura Maarit Pikkupeura	Jul 13, 2023
GSE229219	DNA methylation constrains nucleosome retention in sperm and H3K4 methylation deposition in early mouse embryos [EM-seq]	Methylation profiling by high throughput sequencing	Mus musculus	4	BW	Antoine Peters	Oct 21, 2024
GSE229246	DNA methylation constrains nucleosome retention in sperm and H3K4 methylation deposition in early mouse embryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	122	BW	Antoine Peters	Oct 22, 2024
GSE234966	The histone H3 lysine 36 demethylases KDM2A and KDM2B restrict DNMT3A-mediated de novo DNA methylation in oocytes to support embryonic development [WGBS]	Methylation profiling by high throughput sequencing	Mus musculus	47	BW	Antoine Peters	Mar 27, 2025
GSE234968	The histone H3 lysine 36 demethylases KDM2A and KDM2B restrict DNMT3A-mediated de novo DNA methylation in oocytes to support embryonic development	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	597	BW	Antoine Peters	Mar 27, 2025
GSE237800	Catalytic dependent and independent roles of Tet3 in activation of ectodermal and silencing of mesodermal programs during neuroectoderm specification	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	35	BW CSV	Meelad M Dawlaty	Apr 02, 2024
GSE239777	MeDIP-seq profiles of mouse ApcDHep hepatocytes at day 6 vs wt hepatocytes	Methylation profiling by high throughput sequencing	Mus musculus	3	BW	Angelique Gougelet	Dec 31, 2023
GSE241384	Crypt density and recruited enhancers underlie intestinal tumour initiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	BEDGRAPH BW TAB	Ramesh A. Shivdasani	Nov 15, 2024
GSE244634	Direct genetic transformation bypasses tumor-associated DNA methylation alterations (RRBS)	Methylation profiling by high throughput sequencing	Mus musculus	27	BW	Sara Hetzel	May 20, 2025
GSE248933	Transcriptomic and epigenomic profiling of Tet TKO neural stem cells to study NSC specification and multipotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	36	BEDGRAPH BW CSV TXT	Meelad M Dawlaty	Jul 23, 2024
GSE276084	Direct genetic transformation bypasses tumor-associated DNA methylation alterations	Methylation profiling by high throughput sequencing	Mus musculus	34	BW	Sara Hetzel	May 20, 2025