GEO Browser - GEO

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81 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Methylation profiling by high throughput sequencing			BW
GSE192875	Transcriptional regulation of the thymus master regulator Foxn1	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	72	BROADPEAK BW NARROWPEAK	Jakub Abramson	Aug 03, 2022
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE184757	Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB	Methylation profiling by genome tiling array Other Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	306	BW IDAT TSV TXT	Martin Bizet	Jan 10, 2025
GSE107055	m6A-irCLIP of mouse CD4+ T cell RNA	Methylation profiling by high throughput sequencing	Mus musculus	2	BW SRA Run Selector	Howard Chang	Feb 14, 2018
GSE213901	Whole-genome bisulfite sequencing and histone 3.3 ChIP-seq of microdissected developing mouse lens	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BED BW	William Chang	Sep 24, 2022
GSE203109	Single-molecule simultaneous profiling of DNA methylation and DNA-protein interactions with Nanopore-DamID	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	10	BED BEDGRAPH BW	Seth Cheetham	May 15, 2025
GSE153092	Genome-wide maps of 5hmC levels in mouse Inguinal white adipose tissue	Methylation profiling by high throughput sequencing	Mus musculus	4	BW SRA Run Selector	Sneha Damal Villivalam	Jun 24, 2020
GSE153093	Genome-wide maps of gene expression and 5hmC levels in mouse Inguinal white adipose tissue	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	13	BW	Sneha Damal Villivalam	Jun 24, 2020
GSE176389	Tet1 regulates embryonic stem cell differentiation programs and development independent of its catalytic activity.	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	50	BW SRA Run Selector	Meelad M Dawlaty	Jan 25, 2022
GSE176391	Tet enzymes are required for mammalian embryonic hematopoiesis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	16	BW SRA Run Selector	Meelad M Dawlaty	Feb 19, 2022
GSE213398	Tet2 regulates Sin3a recruitment at active enhancers in embryonic stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	28	BW CSV	Meelad M Dawlaty	Jun 23, 2023
GSE237800	Catalytic dependent and independent roles of Tet3 in activation of ectodermal and silencing of mesodermal programs during neuroectoderm specification	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	35	BW CSV	Meelad M Dawlaty	Apr 02, 2024
GSE248933	Transcriptomic and epigenomic profiling of Tet TKO neural stem cells to study NSC specification and multipotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	36	BEDGRAPH BW CSV TXT	Meelad M Dawlaty	Jul 23, 2024
GSE135638	Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	19	BW SRA Run Selector	Donncha S Dunican	Feb 23, 2020
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE169102	DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	187	BW COV MTX TSV TXT	Guoping Fan	May 05, 2025
GSE90509	Neuronal activity, TGFβ signaling and unpredictable chronic stress affect transcription of Gadd45 family members in vitro and in vivo [MeDIP-Seq]	Methylation profiling by high throughput sequencing	Mus musculus	7	BED BW SRA Run Selector	Henriette Franz	Dec 31, 2017
GSE90513	Neuronal activity, TGFβ signaling and unpredictable chronic stress affect transcription of Gadd45 family members in vitro and in vivo	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	15	BED BW CEL	Henriette Franz	Dec 31, 2017
GSE107955	m6A-seq mapping of mouse hematopoietic stem/progenitor cells	Methylation profiling by high throughput sequencing	Mus musculus	12	BW SRA Run Selector	Madelaine Gogol	Aug 17, 2018
GSE107957	Hematopoietic stem cell expansion through suppression of YTHDF2-mediated m6A-marked mRNA decay	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BW	Madelaine Gogol	Aug 17, 2018