GEO Browser - GEO

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32 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa		SRA Run Selector
GSE162140	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [non-human Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Felis catus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	16	HIC TXT SRA Run Selector	jin long	Apr 20, 2021
GSE143288	A compendium map of Cis-Regulatory Elements in the Pig Genome and epigenetic comparison with the human Genome	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	200	BED BEDGRAPH BIGWIG NARROWPEAK SRA Run Selector	Shuhong Zhao	Feb 26, 2021
GSE167340	ChIP-seq analysis of porcine alveolar macrophages infected with T. gondii RH	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	12	TXT SRA Run Selector	Jing Yang	Dec 31, 2021
GSE166520	ChIP-seq genome-wide maps of nuclear receptor RORγ chromatin state in the liver of pig exposed to mycotoxin	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	2	BED BIGWIG SRA Run Selector	Demin Cai	Feb 01, 2024
GSE119566	ChIP-seq of embryonic muscle sample of two pig breeds	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	8	TAR SRA Run Selector	Delin Mo	Sep 27, 2019
GSE173275	Chromatin structure programs between genetically matched PEF and porcine iPSCs	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	6	BW SRA Run Selector	Aiwen Jiang	Oct 19, 2022
GSE158414	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Sus scrofa	31	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158416	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158418	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158419	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158427	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me1 ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158429	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me3 ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE180056	ESRRB facilitates the conversion of Trophoblast-like Stem Cells from induced pluripotent stem cells by directly regulating KRT8 and CDX2 [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	2	XLS SRA Run Selector	Shuai YU	Oct 14, 2021
GSE168103	Generation and Characterization of Stable Pig Pre-gastrulation Epiblast Stem Cell Lines [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	8	TXT SRA Run Selector	Jianyong Han	Dec 13, 2023
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE189087	Genome-wide maps of Transcriptionalregulation of EGR1 transcription factor in iPAM cells.	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	4	BW CSV SRA Run Selector	Min Zhang	Nov 20, 2021
GSE189397	H3K27ac BL HiChIP and GRID-seq data of LW and MS	Genome binding/occupancy profiling by high throughput sequencing Other	Sus scrofa	12	BEDPE MCOOL TXT SRA Run Selector	Shuhong Zhao	Apr 28, 2022
GSE188588	Hierarchical accumulation of histone variant H2A.Z regulates transcriptional states and histone modifications in early mammalian embryos [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Sus scrofa	62	BW SRA Run Selector	Jing-Jing Zhang	Jun 24, 2022
GSE143484	IRF-1 expressed in the early blastocyst inner cell mass of pigs enhances the pluripotency of induced pluripotent stem cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Sus scrofa	8	BW TXT SRA Run Selector	Jianyong Han	Nov 28, 2020
GSE161563	Identification of chromatin accessibility during the early stage of pig SCNT embryo reprogramming by ATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	6	BW SRA Run Selector	Xue Zhang	Nov 16, 2023