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5211 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		BW
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE144900	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin [sperm - third party reanalysis]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Homo sapiens		BROADPEAK BW NARROWPEAK	Michael Borg	Mar 17, 2020
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE103734	Genome-wide histone modification profiling of inner cell mass and trophoectoderm of blastocyst stage bovine embryos by novel low input RAT-ChIP	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Homo sapiens	43	BW SRA Run Selector	Tõnis Org	Nov 15, 2019
GSE98758	Genome-wide DNA accessibility maps and differential gene expression using ChIP-seq, ATAC-seq and RNA-seq for the human secondary fibroblast cell line hiF-T and whole worms with and without knockdown of FACT complex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	58	BIGWIG BW TSV TXT SRA Run Selector	Scott Allen Lacadie	Aug 29, 2018
GSE224802	spt-2 in C. elegans.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	35	BW	Francesco Nicola Carelli	Feb 09, 2023
GSE116862	Chromatin structure dynamics during human cardiomyocyte differention reveals a role of HERV-H in demarcating TAD boundaries.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT SRA Run Selector	Bing Ren	Jul 09, 2019
GSE130871	Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Pan troglodytes	49	BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Dec 20, 2019
GSE186958	Chromatin structure dynamics during human cardiomyocyte differention	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT	Bing Ren	Nov 01, 2021
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Danio rerio Equus caballus Homo sapiens Mus musculus Sus scrofa domesticus	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE186201	A chemically-targetable transcription factor-chromatin remodeler interaction underlies SARS-CoV-2 susceptibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Chlorocebus sabaeus Homo sapiens	85	BROADPEAK BW NARROWPEAK TXT SRA Run Selector	Cigall Kadoch	Oct 11, 2022
GSE241888	Differences in syncytia formation by SARS-CoV-2 variants modify host chromatin accessibility and cellular senescence via TP53 [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Chlorocebus sabaeus Homo sapiens	114	BW	Jonathan David Lee	Sep 30, 2023
GSE241893	Differences in syncytia formation by SARS-CoV-2 variants modify host chromatin accessibility and cellular senescence via TP53	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Chlorocebus sabaeus Homo sapiens	146	BW SF TXT	Jonathan David Lee	Sep 30, 2023
GSE75356	A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Danio rerio Homo sapiens	48	BW NARROWPEAK	Leonard Zon	Feb 01, 2016
GSE94936	Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Gasterosteus aculeatus Homo sapiens	21	BED BW TXT	John Rawls	May 02, 2017
GSE123105	Selective roles of vertebrate PCF11 in premature and full-length transcript termination	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens	95	BED BEDGRAPH BROADPEAK BW	Kinga Kamieniarz-Gdula	Feb 25, 2019
GSE128086	RNA helicase DDX21 mediates nucleotide stress responses	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens	56	BW NARROWPEAK	Leonard Zon	Feb 04, 2020
GSE131334	Oncogenic CDK13 Mutations Impede Nuclear RNA Surveillance	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	87	BW TXT	Richard A Young	Apr 21, 2023
GSE172069	Developmental chromatin programs determine oncogenic competence in melanoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens	102	BW	Richard Mark White	Apr 15, 2021
GSE198221	Shear stress switches the association of endothelial enhancers from ETV/ETS to KLF transcription factor binding sites	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens	20	BW TXT XLSX	Arndt Siekmann	Mar 14, 2022