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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens			Xinyu Wen
GSE120771	Selective Disruption of Core Regulatory Transcription	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	109	BED HIC TXT	Xinyu Wen	May 31, 2019
GSE83728	Epigenetic Lanscape and BRD4 Transcriptional Dependency of PAX3-FOXO1 Driven Rhabdomyosarcoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	80	BED BEDGRAPH FPKM_TRACKING	Xinyu Wen	Apr 27, 2017
GSE219199	KDM3B inhibitors disrupt PAX3-FOXO1 oncogenic activity in fusion positive rhabdomyosarcoma.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	79	BED HIC MTX TSV TXT	Xinyu Wen	Dec 31, 2023
GSE85171	Epigenetic Reprogramming of mutant RAS-driven Rhabdomyosarcoma via MEK Inhibition	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BED CEL FPKM_TRACKING	Xinyu Wen	Apr 01, 2018
GSE83726	PAX3-FOXO1 establishes myogenic super enhancers [RMS Chip-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	54	BED SRA Run Selector	Xinyu Wen	Apr 27, 2017
GSE162052	The BAF complex blocks Myogenesis in rhabdomyosarcoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	52	BED TXT SRA Run Selector	Xinyu Wen	Apr 01, 2021
GSE116344	Selective Disruption of Core Regulatory Transcription [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	48	BED SRA Run Selector	Xinyu Wen	Jul 16, 2019
GSE147406	Polyomavirus and neuroendocrine regulomes converge to establish tumor dependencies	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	39	BED SRA Run Selector	Xinyu Wen	Jan 01, 2021
GSE85169	MEK inhibition profoundly reprograms myogenic super enhancers in mutant-RAS driven Rhabdomyosarcoma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	38	BED SRA Run Selector	Xinyu Wen	Apr 01, 2018
GSE137168	Liaison between SNAI2 and MYOD enhances oncogenesis and suppresses differentiation in Fusion-Negative Rhabdomyosarcoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	22	HIC NARROWPEAK TXT SRA Run Selector	Xinyu Wen	Dec 25, 2019
GSE140115	CHD4 regulates super-enhancer accessibility in fusion-positive rhabdomyosarcoma and is essential for tumor growth	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BED SRA Run Selector	Xinyu Wen	Dec 20, 2019
GSE147408	Unraveling lineage specific transcription factors involved in the reprogramming of Neuroblastoma from self-renewal to differentiation state	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BED SRA Run Selector	Xinyu Wen	Jul 29, 2020
GSE83725	PAX3-FOXO1 establishes myogenic super enhancers and recruits BRD4 de novo [7250 ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	BED SRA Run Selector	Xinyu Wen	Apr 27, 2017
GSE155861	NuRD subunit CHD4 regulates super-enhancer accessibility in Rhabdomyosarcoma and represents a general tumor dependency	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	BED SRA Run Selector	Xinyu Wen	Aug 08, 2020
GSE129407	Gene Specific Activation Driven by Small Molecules	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	8	BED TXT SRA Run Selector	Xinyu Wen	Apr 30, 2019
GSE136799	Miswired enhancer logic drives translocation positive rhabdomyosarcoma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED SRA Run Selector	Xinyu Wen	Dec 25, 2019
GSE84630	Fusion Negative Rhabdomyosarcoma Cell Lines	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	BED FPKM_TRACKING	Xinyu Wen	Dec 20, 2016
GSE84628	ChIP-seq of Active Histone Mark (H3K27ac) and Myogenic Regulatory Factors (MYF5 and MYOD) in Fusion Negative Rhabdomyosarcoma Cell Lines	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED SRA Run Selector	Xinyu Wen	Dec 20, 2016
GSE120770	Selective Disruption of Core Regulatory Transcription [AQuA-HiChIP]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	2	HIC SRA Run Selector	Xinyu Wen	Sep 27, 2019