GEO Browser - GEO

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35 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		BIGWIG
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE131098	Hammer-seq to measure kinetics of DNA methylation maintenance in HeLa cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	126	BIGWIG TXT SRA Run Selector	Zhuqiang Zhang	Jun 26, 2020
GSE135808	Topoisomerase 1 Nicking-dependent HP1gamma Engagement Mediates Acute Activation of Phase-separated Enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	167	BED BEDGRAPH BIGWIG	Yuliang Tan	Aug 04, 2022
GSE154451	Methylation and gene expression data obtained from Dnmt3b+/+, Dnmt3bD/D and Dnmt3bCI/CI MYC induced T-cell lymphomas (MTCLs).	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	31	BIGWIG TXT SRA Run Selector	Rene Opavsky	Dec 30, 2020
GSE156604	Krab-ZFPs Inhibit Retrovirus by Targeting PBS Sites	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BIGWIG TDF	Bo Yang	Dec 01, 2021
GSE183806	Chromatin architecture of B cell development during the humoral immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	107	BIGWIG BW MCOOL NARROWPEAK SF	Ashley Stephen Doane	Sep 09, 2021
GSE183876	Epigenetic basis of oncogenic-Kras mediated epithelial-cellular proliferation and plasticity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	68	BIGWIG NARROWPEAK TSV	Preetish Kadur Lakshminarasimha Murthy	Dec 22, 2021
GSE186589	Epigenetic dysregulation from chromosomal transit in micronuclei	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	187	BED BIGWIG BW TDF TXT	Albert S Agustinus	Mar 13, 2023
GSE188417	The PAF1 Complex Regulates Transcriptional Termination and Reinitiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	122	BIGWIG BW	Aiwei Wu	Nov 06, 2024
GSE192779	The SWI/SNF subunit Dpf2 licenses Nrf2-dependent gene expression to enforce multilineage control of inflammation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	108	BIGWIG BW TXT	Gloria Mas Martin	Jun 05, 2023
GSE195497	EVI1 drives leukemogenesis through aberrant activation of ERG	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	38	BIGWIG TXT	Florian Andersch	Oct 11, 2022
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE202199	The H2A.Z.1/PWWP2A/NuRD-associated protein HMG20A controls early head and heart developmental transcription programs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	40	BIGWIG BW CSV	Marek Bartkuhn	Dec 12, 2022
GSE202730	Effect of trans-vaccenic acid(TVA) treatment on gene expression of mouse CD8+ T cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	24	BIGWIG	Matthew Oliver Ross	May 08, 2023
GSE203322	BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BIGWIG BW MTX RESULTS TSV TXT	Masaki Nomura	Oct 31, 2023
GSE207058	BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	BEDGRAPH BIGWIG WIG XLSX	Elena Pugacheva	Jan 03, 2024
GSE209627	Genomic binding of NF-Y in mouse and human cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BIGWIG	Diletta Dolfini	Aug 01, 2024
GSE215794	KDM8 epigenetically controls cardiac metabolism to prevent initiation of dilated cardiomyopathy	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	37	BIGWIG	Paul Delgado-Olguin	Dec 23, 2022
GSE221300	Aberrant cell state plasticity mediated by developmental reprogramming precedes colorectal cancer initiation	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	19	BIGWIG BW MTX TSV	Nilay Sethi	Apr 03, 2023
GSE221339	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	40	BED BIGWIG TXT	Brian Magnuson	Aug 30, 2023