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66 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Danio rerio		TXT
GSE106431	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	217	BED BEDGRAPH TXT	Juan J. Tena	Aug 15, 2018
GSE148783	Gain of gene regulatory network interconnectivity at the origin of vertebrates	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Ptychodera flava Xenopus tropicalis	75	TSV TXT	Juan J. Tena	Feb 26, 2022
GSE23762	Off-Target Analysis of Zinc Finger Nucleases	Other Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	21	TXT SRA Run Selector	Scot Wolfe	Aug 25, 2010
GSE39780	Zygotic gene activatory network in zebrafish is globally controlled by Pou5f1 SoxB1 enhancers	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	TXT SRA Run Selector	Manuel Leichsenring	Aug 10, 2013
GSE41458	Zic3 interacts with distant regulatory elements to regulate zebrafish developmental genes	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	BED TXT SRA Run Selector	Vibhor Kumar	Feb 27, 2014
GSE44269	Canonical Nucleosome Organization at Promoters Forms During Genome Activation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio	12	TXT WIG SRA Run Selector	Yong Zhang	Oct 18, 2013
GSE51891	Genome-wide profiling of Smad2 and Eomesa binding in zebrafish blastulas	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	TXT SRA Run Selector	Andrew Christopher Nelson	Oct 15, 2014
GSE57332	Genome-wide profiling of Tbx6myc binding during zebrafish somitogenesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	TXT SRA Run Selector	Andrew Christopher Nelson	Nov 15, 2014
GSE70727	Genome-wide mapping of Hif-1α binding sites in zebrafish [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	BW TXT SRA Run Selector	Justin Jeyakani Joseph Gnanakkan	Mar 22, 2016
GSE70886	Genome-wide mapping of Hif-1α binding sites in zebrafish	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Danio rerio	10	BW TXT	Justin Jeyakani Joseph Gnanakkan	Mar 22, 2016
GSE71434	Allelic reprogramming of the histone modification H3K4me3 in early mammalian development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus	57	BED TXT SRA Run Selector	Bingjie Zhang	Sep 15, 2016
GSE75894	Modulation of tissue repair by regeneration enhancer elements.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	8	TXT WIG SRA Run Selector	Ravi Karra	Apr 08, 2016
GSE77921	SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	BED TXT SRA Run Selector	Leonard Zon	Feb 08, 2021
GSE77923	SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	12	BED TXT	Leonard Zon	Feb 08, 2021
GSE89444	Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	18	BIGWIG TXT SRA Run Selector	Jingli Cao	Jan 28, 2022
GSE90462	Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	45	BIGWIG TXT	John F Rawls	Mar 27, 2017
GSE90637	Differential Roles of the Maternal and Zygotic FGF in Neural Induction in the Zebrafish Embryo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	8	BW TXT SRA Run Selector	Juan J. Tena	Nov 29, 2019
GSE94933	Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells [zebrafish]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	7	BED BW TXT SRA Run Selector	John Rawls	May 02, 2017
GSE94936	Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Gasterosteus aculeatus Homo sapiens	21	BED BW TXT	John Rawls	May 02, 2017
GSE98857	Epigenetical regulation in zebrafish heart regeneration	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	TXT SRA Run Selector	Jizhou Yan	Nov 12, 2017