GEO Browser - GEO

Series

Samples

Platforms

DataSets

252 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Danio rerio
GSE20600	Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	BED WIG SRA Run Selector	Lihua Julie Zhu	Feb 25, 2011
GSE23762	Off-Target Analysis of Zinc Finger Nucleases	Other Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	21	TXT SRA Run Selector	Scot Wolfe	Aug 25, 2010
GSE32483	Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	24	BED WIG SRA Run Selector	Ozren Bogdanovic	May 08, 2012
GSE32880	Conserved Function of lincRNAs in Vertebrate Embryonic Development Despite Rapid Sequence Evolution	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	16	BAM BED BW SRA Run Selector	Igor Ulitsky	Dec 22, 2011
GSE32899	Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis [ChIP_Seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	3	SRA Run Selector	Eivind Valen	Nov 17, 2011
GSE32900	Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	20		Eivind Valen	Nov 17, 2011
GSE34683	Genome-wide maps of binding sites of Nanog-like and Mxtx2 in blastula stage zebrafish embryos	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	WIG YLF SRA Run Selector	Cong Xu	Dec 28, 2011
GSE34684	Nanog-like Regulates Endoderm Formation through the Mxtx2-Nodal Pathway	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Danio rerio	12	CALLS PAIR WIG YLF	Cong Xu	Dec 28, 2011
GSE35050	Extensive conservation of ancient microsynteny across metazoans	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	1	BED SRA Run Selector	Ozren Bogdanovic	Jun 21, 2012
GSE35874	Zebrafish Globin Locus (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	WIG SRA Run Selector	Anthony Dominc DiBiase	Feb 17, 2012
GSE35875	Zebrafish Globin Locus (DNAse)	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	2	WIG SRA Run Selector	Anthony Dominc DiBiase	Feb 17, 2012
GSE35895	Zebrafish Globin Locus	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	WIG	Anthony Dominc DiBiase	Feb 17, 2012
GSE39780	Zygotic gene activatory network in zebrafish is globally controlled by Pou5f1 SoxB1 enhancers	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	TXT SRA Run Selector	Manuel Leichsenring	Aug 10, 2013
GSE40629	Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	2	TDF SRA Run Selector	Håvard Aanes	Nov 01, 2012
GSE41458	Zic3 interacts with distant regulatory elements to regulate zebrafish developmental genes	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	BED TXT SRA Run Selector	Vibhor Kumar	Feb 27, 2014
GSE44269	Canonical Nucleosome Organization at Promoters Forms During Genome Activation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio	12	TXT WIG SRA Run Selector	Yong Zhang	Oct 18, 2013
GSE48254	A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	7	BED BW SRA Run Selector	Shaun Mahony	Dec 02, 2013
GSE51891	Genome-wide profiling of Smad2 and Eomesa binding in zebrafish blastulas	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	TXT SRA Run Selector	Andrew Christopher Nelson	Oct 15, 2014
GSE51894	Smad2 and Eomesa	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	16	GPR	Andrew Christopher Nelson	Oct 15, 2014
GSE57332	Genome-wide profiling of Tbx6myc binding during zebrafish somitogenesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	TXT SRA Run Selector	Andrew Christopher Nelson	Nov 15, 2014