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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster		SRA Run Selector
GSE16013	Genome-wide maps of chromatin state in staged Drosophila embryos, ChIP-seq	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	114	BED BEDGRAPH SRA Run Selector	Kevin P. White	May 12, 2009
GSE17729	Long range spreading of dosage compensation in Drosophila captures transcribed autosomal genes inserted on X	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	2	BEDGRAPH SRA Run Selector	Peter Kharchenko	Aug 20, 2009
GSE18643	Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	9	BEDGRAPH TXT SRA Run Selector	Sergei Nechaev	Dec 11, 2009
GSE20000	Genome-wide maps of chromatin state in staged Drosophila embryos and cell lines.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	34	BED BEDGRAPH SRA Run Selector	Kevin P. White	Jan 26, 2010
GSE17697	Complex patterns of accessibility discriminate sites of PcG repression, H4K16 acetylation and replication initiation	Methylation profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	11	CEL TXT SRA Run Selector	Michaela Schwaiger	Mar 16, 2010
GSE20887	ORC2 S2-DSRC ChIP-Seq experiment	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	3	BEDGRAPH GFF3 SRA Run Selector	DCC modENCODE	Mar 16, 2010
GSE20888	ORC2 ML-DmBG3-c2 ChIP-Seq experiment	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	3	BEDGRAPH GFF3 SRA Run Selector	DCC modENCODE	Mar 16, 2010
GSE20889	ORC2 KC-167 ChIP-Seq experiment	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	3	BEDGRAPH GFF3 SRA Run Selector	DCC modENCODE	Mar 16, 2010
GSE20890	MCM KC-167 ChIP-Seq experiment	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	3	BEDGRAPH GFF3 SRA Run Selector	DCC modENCODE	Mar 16, 2010
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Rhodonia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE19325	Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	9	BED BEDGRAPH XLS SRA Run Selector	Dustin E Schones	Apr 16, 2010
GSE23537	modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	247	BAR BED BEDGRAPH CEL GFF WIG SRA Run Selector	Kevin P. White	Aug 11, 2010
GSE19025	Genome-wide binding profile for Heat Shock Factor (HSF).	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	5	TXT SRA Run Selector	Michael Joseph Guertin	Sep 02, 2010
GSE22119	Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation: MNase-seq data	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	3	TXT SRA Run Selector	Karen Adelman	Oct 18, 2010
GSE21615	Genomic maps of homotypic H2Av, heterotypic H2Av, input and 80mM salt soluble chromatin from Drosophila S2 cells	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	9	BEDGRAPH RTF TXT WIG SRA Run Selector	Jorja Henikoff	Nov 01, 2010
GSE25709	[E-MTAB-214] ChiP-seq profiling of Drosophila melanogaster salivary glands to identify targets for NSL1 and MCRS2.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	3	SRA Run Selector	European Bioinformatics Institute	Dec 04, 2010
GSE24521	Polycomb preferentially targets stalled promoters of coding and non-coding transcripts	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Drosophila melanogaster	14	WIG SRA Run Selector	Daniel Enderle	Dec 21, 2010
GSE22447	ChIP-Seq sequencing of H3K9me2 in third instar Drosophila larvae	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	2	BED WIG SRA Run Selector	Hendrik Marks	Jan 05, 2011
GSE24115	Genome-wide chromatin analysis of wing imaginal discs	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	7	BED TXT WIG SRA Run Selector	Enrique Blanco	Feb 17, 2011
GSE27679	modENCODE_Lieb and White Lab: unltra-deep sequencing data of genomic DNA, chromatin input, and ChIP of Su(Hw) and H3K36me3 from S2 cells on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	9	BED TXT SRA Run Selector	Yiwen Chen	Mar 04, 2011