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73 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli
GSE100233	Permissive zones for the centromere-binding protein ParB on the Caulobacter crescentus chromosome	Genome binding/occupancy profiling by high throughput sequencing Other	Caulobacter vibrioides Escherichia coli	30	TXT SRA Run Selector	Tung Ba Khanh Le	Aug 09, 2017
GSE168968	A CTP-dependent gating mechanism enables ParB spreading on DNA	Genome binding/occupancy profiling by high throughput sequencing	Caulobacter vibrioides Escherichia coli	8	TXT SRA Run Selector	Tung Ba Khanh Le	May 01, 2021
GSE134665	Structural and biochemical analyses of Caulobacter crescentus ParB reveal the role of its N-terminal domain in chromosome segregation	Genome binding/occupancy profiling by high throughput sequencing	Caulobacter vibrioides NA1000 Escherichia coli	27	TXT SRA Run Selector	Tung Ba Khanh Le	Jul 22, 2020
GSE245749	TnpB homologs exapted from transposons are RNA-guided transcription factors	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Enterobacter cloacae Enterobacter sp. BIDMC93 Escherichia coli	51	BED BW XLSX	Samuel Henry Sternberg	Apr 22, 2024
GSE15188	Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae	3	TXT WIG SRA Run Selector	Ghia Euskirchen	Jul 15, 2009
GSE23712	High-throughput sequencing reveals a simple model of nucleosome energetics	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae	1	TXT WIG	George Locke	Aug 20, 2010
GSE24991	[E-MTAB-332] H-NS and Fis binding to E. coli K12	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	9	TXT SRA Run Selector	European Bioinformatics Institute	Feb 05, 2011
GSE58623	BolA is a transcriptional switch that turns off motility and turns on biofilm development (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	2	TXT SRA Run Selector	Cecilia M. Arraiano	Feb 19, 2015
GSE64847	Integrated analysis of molecular and systems level function of the Crp regulon [ChIP-exo]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	43	GFF SRA Run Selector	Haythem Latif	Jan 09, 2017
GSE64849	Integrated analysis of molecular and systems level function of the Crp regulon	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	68	GFF	Haythem Latif	Jan 09, 2017
GSE65641	Systems approach elucidates convoluted transcriptional regulation on carbon metabolism [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	12	GFF SRA Run Selector	Donghyuk Kim	Apr 18, 2018
GSE65643	Systems approach elucidates convoluted transcriptional regulation on carbon metabolism	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli	24	GFF	Donghyuk Kim	Apr 18, 2018
GSE65710	Genome-wide OxyR and SoxRS transcriptional regulatory networks coordinate complex cellular responses to oxidative stress [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	6	GFF SRA Run Selector	Donghyuk Kim	Aug 13, 2015
GSE65712	Genome-wide OxyR and SoxRS transcriptional regulatory networks coordinate complex cellular responses to oxidative stress	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli	14	GFF	Donghyuk Kim	Aug 13, 2015
GSE66482	Decoding genome-wide GadEWX transcriptional regulatory networks reveals a multifaceted cellular response to acid stress in Escherichia coli	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli str. K-12 substr. MG1655	16	GFF	Donghyuk Kim	Aug 11, 2015
GSE67869	Genome-wide maps of ParBF (SopB) binding along DNA in E. coli	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	2	TXT SRA Run Selector	Jean-Yves Bouet	Sep 04, 2015
GSE69250	Condensin mediates the chromosomal clustering of highly transcribed genes in bacteria	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	6	TXT SRA Run Selector	Long Cai	May 29, 2015
GSE71249	Quantitative Genomic Analysis of RecA Protein Binding During DNA Double-Strand Break Repair Reveals RecBCD Action in vivo	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	9	TXT SRA Run Selector	Charlotte Anne Cockram	Aug 11, 2015
GSE77181	RecG Directs DNA Synthesis During Double-Strand Break Repair [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	4	BEDGRAPH SRA Run Selector	Benura Azeroglu	May 19, 2016
GSE77184	RecG Directs DNA Synthesis During Double-Strand Break Repair	Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli	27	BEDGRAPH	Benura Azeroglu	May 19, 2016