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493 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae		SRA Run Selector
GSE13622	The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus Saccharomyces cerevisiae synthetic construct	8	TAB TXT SRA Run Selector	Desiree Tillo	Dec 18, 2008
GSE15188	Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae	3	TXT WIG SRA Run Selector	Ghia Euskirchen	Jul 15, 2009
GSE18530	High-Resolution Nucleosome Mapping Reveals Transcription-Dependent Promoter Packaging	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	5	TXT SRA Run Selector	Assaf Weiner	Oct 15, 2009
GSE18939	Comparison of nucleosome positioning among two yeast species and their hybrid for wild-type and deletion mutant strains	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces paradoxus Saccharomyces paradoxus	12	TXT SRA Run Selector	Itay Tirosh	Mar 01, 2010
GSE16926	ORC precisely positions nucleosomes at origins of replication	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	5	BED PDF TXT SRA Run Selector	Matthew Lucas Eaton	Mar 19, 2010
GSE20078	The effect of bound RSC/nucleosome complex on chromatin architecture and gene expression at the GAL genes of yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	2	TXT SRA Run Selector	Jude Kendall	May 01, 2010
GSE20870	The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BED BEDGRAPH MAP SRA Run Selector	Jacques Rougemont	May 28, 2010
GSE22211	Genome-wide nucleosome position data for 12 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Debaryomyces hansenii Kluyveromyces lactis Lachancea kluyveri NRRL Y-12651 Lachancea waltii Nakaseomyces glabratus Naumovozyma castellii Saccharomyces bayanus Saccharomyces cerevisiae Saccharomyces mikatae Saccharomyces paradoxus Yarrowia lipolytica	13	TXT WIG SRA Run Selector	Alex M Tsankov	Jul 06, 2010
GSE26412	MNase digestion-sensitive nucleosomes in Saccharomyces cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	10	TXT SRA Run Selector	Yuanxin Xi	Jan 24, 2011
GSE27381	Multiplexed identification of the genomic targets of DNA-binding proteins	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	22	TXT SRA Run Selector	David Mayhew	Feb 18, 2011
GSE26449	Genome-wide mapping of meiotic double-strand breaks by sequencing Spo11 oligos.	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BED TXT SRA Run Selector	Scott Keeney	Mar 07, 2011
GSE26452	Whole-genome nucleosome mapping in meiotic diploid S. cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	6	TXT SRA Run Selector	Scott Keeney	Mar 07, 2011
GSE28734	Genome wide H3K9ac and SAGA occupancy at OX growth phase and RC quiescent phase of yeast metabolic cycle	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	WIG SRA Run Selector	Ling Cai	May 19, 2011
GSE29124	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L (ChIP-Seq data)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	9	BAM BIGWIG SRA Run Selector	Jacques Rougemont	Jul 01, 2011
GSE26493	Genome-wide nucleosome position maps in Saccharomyces cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	TXT SRA Run Selector	David Johannes Clark	Jul 20, 2011
GSE26392	Nucleosome maps in S. cerevisiae at varying phosphate concentrations	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	2	TXT SRA Run Selector	Yuriy L Orlov	Aug 01, 2011
GSE28839	Genome-wide nucleosome position data for 3 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Saccharomyces cerevisiae Schizosaccharomyces pombe	7	TXT WIG SRA Run Selector	Alex M Tsankov	Aug 01, 2011
GSE31015	A role for Snf2 related nucleosome spacing enzymes in genome-wide nucleosome organization	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	5	BW SRA Run Selector	Triantafyllos Gkikopoulos	Sep 16, 2011
GSE29506	Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	19	WIG SRA Run Selector	Xu Zhou	Sep 28, 2011
GSE28269	Patterns and mechanisms of ancestral histone protein inheritance in budding yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BEDGRAPH TXT SRA Run Selector	Assaf Weiner	Oct 06, 2011