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823 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae
GSE13322	Efficient Yeast ChIP-Seq using Multiplex Short-Read DNA Sequencing	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	6	TXT	Ghia Euskirchen	Oct 24, 2008
GSE13622	The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus Saccharomyces cerevisiae synthetic construct	8	TAB TXT SRA Run Selector	Desiree Tillo	Dec 18, 2008
GSE15188	Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae	3	TXT WIG SRA Run Selector	Ghia Euskirchen	Jul 15, 2009
GSE18530	High-Resolution Nucleosome Mapping Reveals Transcription-Dependent Promoter Packaging	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	5	TXT SRA Run Selector	Assaf Weiner	Oct 15, 2009
GSE19635	Genome-wide Ste12-binding site mapping in MATa segregants of YJM789 x S96 cross	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	174	TXT	Wei Zheng	Feb 18, 2010
GSE19636	Genetic Analysis of Variation in Transcription Factor Binding in Yeast	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	222	TXT	Wei Zheng	Feb 18, 2010
GSE18939	Comparison of nucleosome positioning among two yeast species and their hybrid for wild-type and deletion mutant strains	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces paradoxus Saccharomyces paradoxus	12	TXT SRA Run Selector	Itay Tirosh	Mar 01, 2010
GSE16926	ORC precisely positions nucleosomes at origins of replication	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	5	BED PDF TXT SRA Run Selector	Matthew Lucas Eaton	Mar 19, 2010
GSE20078	The effect of bound RSC/nucleosome complex on chromatin architecture and gene expression at the GAL genes of yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	2	TXT SRA Run Selector	Jude Kendall	May 01, 2010
GSE20870	The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BED BEDGRAPH MAP SRA Run Selector	Jacques Rougemont	May 28, 2010
GSE21960	The role of nucleosome positioning in the evolution of gene regulation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Debaryomyces hansenii Kluyveromyces lactis Lachancea kluyveri NRRL Y-12651 Lachancea waltii Nakaseomyces glabratus Naumovozyma castellii Saccharomyces bayanus Saccharomyces cerevisiae Saccharomyces mikatae Saccharomyces paradoxus Yarrowia lipolytica	61	TXT WIG	Alex M Tsankov	Jul 06, 2010
GSE22211	Genome-wide nucleosome position data for 12 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Debaryomyces hansenii Kluyveromyces lactis Lachancea kluyveri NRRL Y-12651 Lachancea waltii Nakaseomyces glabratus Naumovozyma castellii Saccharomyces bayanus Saccharomyces cerevisiae Saccharomyces mikatae Saccharomyces paradoxus Yarrowia lipolytica	13	TXT WIG SRA Run Selector	Alex M Tsankov	Jul 06, 2010
GSE23712	High-throughput sequencing reveals a simple model of nucleosome energetics	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae	1	TXT WIG	George Locke	Aug 20, 2010
GSE26412	MNase digestion-sensitive nucleosomes in Saccharomyces cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	10	TXT SRA Run Selector	Yuanxin Xi	Jan 24, 2011
GSE27381	Multiplexed identification of the genomic targets of DNA-binding proteins	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	22	TXT SRA Run Selector	David Mayhew	Feb 18, 2011
GSE26449	Genome-wide mapping of meiotic double-strand breaks by sequencing Spo11 oligos.	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BED TXT SRA Run Selector	Scott Keeney	Mar 07, 2011
GSE26452	Whole-genome nucleosome mapping in meiotic diploid S. cerevisiae	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	6	TXT SRA Run Selector	Scott Keeney	Mar 07, 2011
GSE28734	Genome wide H3K9ac and SAGA occupancy at OX growth phase and RC quiescent phase of yeast metabolic cycle	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	WIG SRA Run Selector	Ling Cai	May 19, 2011
GSE29124	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L (ChIP-Seq data)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	9	BAM BIGWIG SRA Run Selector	Jacques Rougemont	Jul 01, 2011
GSE29125	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	25	BAM BIGWIG	Jacques Rougemont	Jul 01, 2011