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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum			TXT
GSE206365	HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions.	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Solanum lycopersicum	79		BIGWIG NARROWPEAK TXT	Jing An	Jan 03, 2023
GSE128680	Multiscale gene expression profiling of 1 cm root tips of control and submerged Oryza sativa, Medicago truncatula, Solanum lycopersicum and Solanum pennellii seedlings	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Medicago truncatula Oryza sativa Japonica Group Solanum lycopersicum Solanum pennellii	231		BED BW TXT XLSX SRA Run Selector	Roger B Deal	Sep 19, 2019
GSE155321	DNA features beyond the transcription factor binding sites specify target recognition by plant bHLHs	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by array	Arabidopsis thaliana Marchantia polymorpha Solanum lycopersicum	35		NARROWPEAK TXT	Jose M. Franco-Zorrilla	Dec 01, 2020
GSE243908	THE EPIGENOME PLAYS A MAJOR ROLE IN TOMATO 3D CHROMATIN ORGANIZATION [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	9		BIGWIG BROADPEAK NARROWPEAK TXT	Xiaoning HE	Aug 05, 2024
GSE172249	Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [green fruit]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	393		BED BW TXT SRA Run Selector	Yu Ma	Jun 30, 2023
GSE172260	Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [red fruit]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	393		BED BW TXT SRA Run Selector	Yu Ma	Jun 30, 2023
GSE173208	Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	12		BW TXT SRA Run Selector	Yu Ma	Jun 30, 2023
GSE196887	Histone code dynamics during nitrogen response in tomato	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Solanum lycopersicum	84		TXT	Ryan Patrick	Nov 08, 2023
GSE119565	Regulatory network of SlDof1 in fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	10		TAR TXT	Yuying Wang	Dec 01, 2020
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282		BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018