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13 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	synthetic construct			SRA Run Selector
GSE13622	The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus Saccharomyces cerevisiae synthetic construct	8		TAB TXT SRA Run Selector	Desiree Tillo	Dec 18, 2008
GSE60378	Calibrating ChIP-seq with nucleosomal internal standards to measure histone modification density genome-wide	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus synthetic construct	27		BIGWIG SRA Run Selector	Alexander Ruthenburg	May 07, 2015
GSE84888	Distinct roles for motif affinity, chromatin state, and co-regulatory motifs in PPARγ binding and enhancer activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus synthetic construct	21		TXT SRA Run Selector	Sharon R Grossman	Feb 03, 2017
GSE81026	Cis Regulatory Element Scan by Tiling-deletion and Sequencing	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens synthetic construct	23		BED BW PDF TAR SRA Run Selector	Bing Ren	Apr 17, 2017
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	244		TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE118118	A combination of transcription factors mediates inducible interchromosomal contacts	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces uvarum synthetic construct	123		BED BEDGRAPH FA GFF TXT SRA Run Selector	Seungsoo Kim	Aug 05, 2018
GSE138576	The DNA-binding protein HTa from Thermoplasma acidophilum is an archaeal histone analog (Mnase-seq and EMSA-seq)	Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Thermoplasma acidophilum synthetic construct	12		BW SRA Run Selector	Tobias Warnecke	Oct 08, 2019
GSE134143	Chromatin fiber invasion and nucleosome displacement by the Rap1 transcription factor	Genome binding/occupancy profiling by high throughput sequencing	synthetic construct	6		BIGWIG FASTA SRA Run Selector	Sevil Zencir	Nov 21, 2019
GSE144647	SELEX and ChIP/CLIP-Seq identification of nucleic acid sequences bound by the DDX43 KH domain (89 aa)	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens synthetic construct	10		BEDGRAPH CSV SRA Run Selector	Yuliang Wu	Feb 03, 2020
GSE152639	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct	20		BW FA VCF SRA Run Selector	Peter A Jones	Jun 17, 2020
GSE118725	Systematic Analysis of Transcription Factors Binding to Noncoding Variants	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens synthetic construct	11359		BW HIC NARROWPEAK TSV TXT VCF SRA Run Selector	Yunjiang Qiu	Oct 28, 2020
GSE184454	Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster synthetic construct	61		BIGWIG PDF TXT SRA Run Selector	Siqian Feng	May 23, 2022
GSE123645	Super-enhancer driven MYST family histone lysine acetyltransferases are critical for nasopharyngeal carcinoma cell growth and survival	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens synthetic construct	9		TXT SRA Run Selector	Sizun Jiang	Nov 21, 2022