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909 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		WIG
GSE222972	Epigenomic analysis of regulatory evolution in mole rats	Genome binding/occupancy profiling by high throughput sequencing Other	Cavia porcellus Fukomys damarensis Heterocephalus glaber Mus musculus	160	NARROWPEAK WIG	Diego Villar	Aug 21, 2023
GSE67454	A simple method for generating high-resolution maps of genome wide protein binding	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	5	BED WIG SRA Run Selector	Jorja Henikoff	Jun 12, 2015
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE20752	Comparative Epigenomic Analysis of Murine and Human Adipogenesis	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	111	CEL TXT WIG	Tarjei S Mikkelsen	Sep 30, 2010
GSE21614	Cell-Type-Specific TGF-beta Signaling is Targeted to Genes that Control Cell Identity: ChIP-Seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	21	TXT WIG SRA Run Selector	Richard A Young	Aug 24, 2011
GSE21621	Cell-Type-Specific TGF-beta Signaling is Targeted to Genes that Control Cell Identity	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	22	TXT WIG	Richard A Young	Aug 24, 2011
GSE27450	Cross-species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TXT WIG	Susanne Mandrup	Feb 23, 2011
GSE28254	Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED WIG SRA Run Selector	Arjen Brinkman	Mar 27, 2012
GSE29130	Epigenetic profiling of hematopoietic stem cells and leukemia stem cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	15	WIG SRA Run Selector	Amit Sinha	Sep 13, 2011
GSE29196	Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	55	WIG YLF	Teresa Venezia Bowman	Oct 07, 2011
GSE29305	NSD2 links dimethylation of histone H3 at lysine 36 to oncogenic programming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus	25	TXT WIG	kaifu chen	Nov 29, 2011
GSE32587	Large-Scale Discovery of Enhancers from Human Heart Tissue	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	4	BED TXT WIG SRA Run Selector	Matthew James Blow	Dec 04, 2011
GSE34260	Candida albicans induces monocyte training via epigenetic programming through a dectin 1-dependent pathway	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED WIG SRA Run Selector	H.G. Stunnenberg	Dec 21, 2012
GSE34785	Genome-wide assay of Vezf1 and RNA Polymerase II binding	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	9	WIG SRA Run Selector	Kevin Brick	Mar 09, 2012
GSE36620	TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	14	WIG SRA Run Selector	Matthieu Defrance	Feb 07, 2013
GSE38561	CpG islands and GC content dictate nucleosome depletion in a transcription independent manner at mammalian promoters (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	9	WIG SRA Run Selector	Romain Fenouil	Jun 12, 2012
GSE38563	CpG islands and GC content dictate nucleosome depletion in a transcription independent manner at mammalian promoters (MNase-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	5	WIG SRA Run Selector	Romain Fenouil	Jun 12, 2012
GSE38577	CpG islands and GC content dictate nucleosome depletion in a transcription independent manner at mammalian promoters	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	WIG	Romain Fenouil	Jun 12, 2012
GSE39263	Modulation of gene expression by ZNF143, THAP11 and NOTCH1 via overlapping binding sites in mammalian cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	TXT WIG SRA Run Selector	PHILIPPE CARBON	Feb 13, 2013
GSE42881	A High-Resolution Enhancer Atlas of the Developing Telencephalon	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	3	TXT WIG SRA Run Selector	Matthew James Blow	Jan 29, 2013