GEO Browser - GEO

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139 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TAR
GSE270915	The expression order determines the pioneer functions of Ngn3 and NeuroD1 in pancreatic endocrine differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3745	BEDGRAPH CSV MTX TAR TBI TSV	Cheng-ran Xu	Feb 15, 2025
GSE239603	APOE4 impairs the microglial response in Alzheimer's disease by inducing TGFbeta-mediated checkpoints	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	274	BW TAR	Rayk Behrendt	Jul 31, 2023
GSE160764	Epigenetic signals that direct cell type specific interferon beta response in mouse cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	221	BED MTX TAR TSV TXT SRA Run Selector	Markus Muckenhuber	Dec 31, 2022
GSE185271	Proper parental histone allocation is required for mouse embryonic stem cell differentiation and histone post-transcription modification inheritance	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	143	BW TAR TSV SRA Run Selector	haiyun gan	May 15, 2023
GSE201817	Prenatal immune stress blunts microglia reactivity which impairs neurocircuitry	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	138	NARROWPEAK TAR	Lindsay N Hayes	Jul 01, 2022
GSE242067	Genome access is transcription factor specific and defined by nucleosome position	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	131	BW TAR TXT	Dirk Schuebeler	Aug 13, 2024
GSE84795	Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	114	BW TAR	Guillaume Andrey	Dec 06, 2016
GSE231502	CRISPR screens unveil nutrient-dependent lysosomal and mitochondrial nodes impacting intestinal tissue-resident memory CD8+ T cell formation	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	108	CEL TAR	Hongbo Chi	Oct 14, 2024
GSE262989	Psychedelic control of neuroimmune interactions governing fear	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	108	H5 H5AD NARROWPEAK TAR TXT XLSX	Michael Wheeler	Mar 02, 2025
GSE193463	HMGNs Regulate White Adipocyte Browning By Stabilizing Cell Identity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	102	NARROWPEAK TAR	Michael Bustin	Oct 19, 2022
GSE231869	Modulation of CTCF barrier permeability by ZFP661 enhances protocadherin diversity for proper cortical dendritic projection in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	102	BED BW NARROWPEAK TAR TXT	Jinpu Jin	May 09, 2023
GSE169044	Transcription factor antagonism regulates heterogeneity in embryonic stem cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	101	BIGWIG TAR XLSX SRA Run Selector	Sofia Hu	Nov 21, 2022
GSE96107	Multi-scale 3D genome rewiring during mouse neural development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	92	BW NARROWPEAK TAR TXT SRA Run Selector	Boyan Bonev	Oct 18, 2017
GSE101717	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	91	BEDGRAPH MATRIX NARROWPEAK TAR TXT	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE216800	Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	89	CEL CSV TAR	Hongbo Chi	Nov 15, 2023
GSE271760	Structural perturbation of chromatin domains with multiple developmental regulators can severely impact gene regulation and development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	88	TAR	Pedro P Rocha	Aug 06, 2024
GSE254090	A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	87	BIGWIG BW RESULTS TAR	Elizabeth C Engle	Aug 06, 2024
GSE172526	Postnatal expansion of the lymph node stromal cell pool towards reticular and CD34+ stromal cell subsets	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	86	BW TAR	Joern Pezoldt	Oct 07, 2022
GSE190286	Aged intestinal stem cells propagate cell-intrinsic sources of inflammaging in mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	86	TAR	Erica Valentini	Oct 26, 2023
GSE156707	Sex-specific control of human heart maturation by the progesterone receptor	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	85	TAR	Enzo Porrello	Mar 22, 2021