GEO Browser - GEO

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139 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TAR
GSE101717	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	91	BEDGRAPH MATRIX NARROWPEAK TAR TXT	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE254090	A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	87	BIGWIG BW RESULTS TAR	Elizabeth C Engle	Aug 06, 2024
GSE171919	A conserved YAP/Notch/REST network controls the neuroendocrine cell fate in the lungs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	75	TAR	Julien Sage	Feb 07, 2022
GSE171918	A conserved YAP/Notch/REST network controls the neuroendocrine cell fate in the lungs [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	TAR SRA Run Selector	Julien Sage	Feb 07, 2022
GSE285187	A core stemness program in exhausted CD8+ T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BED BW TAR TBI TSV	Min Peng	Apr 23, 2025
GSE196993	A palmitate-rich metastatic niche enables metastasis growth via p65 acetylation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	37	BW MTX NARROWPEAK TAR TSV	Juan Fernández-García	Jun 01, 2022
GSE239603	APOE4 impairs the microglial response in Alzheimer's disease by inducing TGFbeta-mediated checkpoints	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	274	BW TAR	Rayk Behrendt	Jul 31, 2023
GSE192575	Acquired semi-squamalization during chemotherapy suggests a differentiation therapy for bladder cancer	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	42	CSV GAPPEDPEAK TAR	Xaingyu Pan	Jul 09, 2022
GSE190286	Aged intestinal stem cells propagate cell-intrinsic sources of inflammaging in mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	86	TAR	Erica Valentini	Oct 26, 2023
GSE207997	Analysis of Polycomb Repressive Complex 1 subunits across cell cycle in pluripotent cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	53	BEDGRAPH BIGWIG TAR	Jordi Martorell-Marugan	Dec 02, 2022
GSE218052	Autophagy controls DNA accessibility to immunoglobulin variable regions and centroblast dynamics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	H5 TAR	Marta Crespi-Sallan	May 12, 2025
GSE199357	Autoreactive CD8+ T cells are restrained by an exhaustion-like program that is maintained by LAG3	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BIGWIG TAR TXT	Anthony Richard Cillo	Apr 08, 2022
GSE198423	CD8+ T cell responsiveness to anti-PD-1 is epigenetically regulated by Suv39h1 in melanomas	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	BED TAR	Paul Gueguen	Mar 14, 2022
GSE126072	CRISPR screening reveals targets to reprogram long-lived effector CD8+ T cells for cancer therapy.	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	50	BW CEL TAR TXT	Hongbo Chi	Dec 11, 2019
GSE231502	CRISPR screens unveil nutrient-dependent lysosomal and mitochondrial nodes impacting intestinal tissue-resident memory CD8+ T cell formation	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	108	CEL TAR	Hongbo Chi	Oct 14, 2024
GSE160598	CRISPR screens unveil signal hubs for nutrient licensing of T cell immunity	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	52	CEL TAR	Hongbo Chi	Sep 26, 2021
GSE134529	CRISPR/Cas9/AAV9-sgRNA Mediated In Vivo Genome Editing Reveals the Indispensability of Myc During Muscle Stem Cells Activation by Remodeling the 3D Chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	51	BEDGRAPH FPKM_TRACKING TAR ZIP	Yingzhe Ding	Sep 16, 2021
GSE272483	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Mus musculus	54	BW NARROWPEAK TAR	Lucille Lopez-Delisle	Jul 18, 2024
GSE247511	Cadherins modulate the self-organizing potential of gastruloids	Expression profiling by high throughput sequencing Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	83	BW LOOM NARROWPEAK TAR	ALEXANDRE MAYRAN	Jul 18, 2024
GSE190751	ChIP-seq data of CDYL in mouse dorsal root ganglia	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	TAR TXT SRA Run Selector	Zhao-wei' Sun	Feb 08, 2022