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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		H5AD
GSE294772	Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain Aging [snATAC-Seq] [10X Multiome]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	142	H5 H5AD TBI TSV	Maria Luisa Amaral	May 02, 2025
GSE216542	scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	22	CSV H5AD JPG JSON MTX PNG RDS TIFF TSV XLSX	Olga Anczukow	Sep 29, 2024
GSE207698	Epigenetic plasticity cooperates with emergent cell-cell interactions to drive neoplastic tissue remodeling in the pancreas [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	H5 H5AD TXT	Cassandra Burdziak	Apr 27, 2023
GSE272038	Multi-tissue single cell profiling of genetically diverse mouse models reveals mechanisms of resilience to obesity and diabetes [scATAC-seq_islet]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	H5AD	Gary Churchill	Dec 31, 2024
GSE272075	Multi-tissue single cell profiling of genetically diverse mouse models reveals mechanisms of resilience to obesity and diabetes [snATAC_seq_adipose]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	H5AD	Gary Churchill	Dec 31, 2024
GSE207969	Terminal differentiation and persistence of effector regulatory T cells essential for the prevention of intestinal inflammation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	33	CSV H5AD MTX TAR TSV	Stanislav Dikiy	Jul 11, 2023
GSE204765	Multi-modal skin atlas associates a multicellular immune-stromal community with altered cornification and T cell expansion in atopic dermatitis.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	46	H5AD RDS	Evgenij Fiskin	May 13, 2025
GSE253345	The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	H5 H5AD TSV	Saida Hadjab	Jul 19, 2024
GSE211863	Probing cell identity hierarchies by fate titration and collision during direct reprogramming [scRNA-seq & scATAC-seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED H5 H5AD TSV	Bob Hersbach	Sep 16, 2022
GSE288730	Organism-wide cellular dynamics and epigenomic remodeling in mammalian aging	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	CSV H5AD	Ziyu Lu	May 15, 2025
GSE276570	Single-cell profiling of remyelination in the LPC model	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	27	H5AD H5SEURAT	Evan Macosko	Sep 09, 2024
GSE168776	Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	CSV GTF H5AD MTX NARROWPEAK SRA Run Selector	Elisabeth Rebboah	Mar 12, 2021
GSE236556	Control of nutrient uptake by IRF4 orchestrates innate immune memory	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	CSV H5AD	Endi K Santosa	Aug 02, 2023
GSE291432	Defining molecular circuits of CD8+ T cell responses in tissues during latent viral infection	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	13	H5AD TXT	Endi K Santosa	May 01, 2025
GSE247101	Chronic Interferon Stimulated Gene Transcription Promotes Oncogene Induced Breast Cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	21	CSV H5AD	Hexiao Wang	Dec 20, 2024
GSE262989	Psychedelic control of neuroimmune interactions governing fear	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	108	H5 H5AD NARROWPEAK TAR TXT XLSX	Michael Wheeler	Mar 02, 2025
GSE186614	OCA-T1 and OCA-T2 are coactivators of POU2F3 in the tuft cell lineage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	79	BIGWIG H5 H5AD NARROWPEAK TXT SRA Run Selector	Xiaoli Sky Wu	May 01, 2022
GSE240753	Unveiling the Impact of Arsenic Toxicity on Immune Cells in Atherosclerotic Plaques: Insights from Single-Cell Multi-Omics Profiling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	H5AD	Yang Xiuhui	Oct 03, 2023
GSE246791	Single-cell analysis of chromatin accessibility in the adult mouse brain	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	228	CSV H5AD TXT	Songpeng Zu	Nov 02, 2023