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659 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		CSV
GSE241159	Interspecies comparison reveals Hmga1 as driver of cardiac regeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	42	BW CSV TSV	Mara Bouwman	Nov 15, 2024
GSE199801	A CpG island-encoded mechanism protects genes from premature transcription termination [SET1_ChIPseq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	60	BED BW CSV	Emilia Dimitrova	Dec 22, 2022
GSE43988	The Estrogen receptor alpha regulated NEAT1 long non-coding RNA promotes prostate cancer progression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	9	BED CSV RPKM	Dimple Chakravarty	Dec 01, 2014
GSE74977	The LRF/ZBTB7A transcription factor is a BCL11A-independent repressor of fetal hemoglobin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	35	CSV TDF SRA Run Selector	Peter Kharchenko	Jan 15, 2016
GSE79725	NKX2.2	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	18	BW CSV	Lori Sussel	Dec 20, 2016
GSE81255	Nfib promotes Metastasis through a Widespread Increase in Chromatin Accessibility [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BED BROADPEAK BW CSV SRA Run Selector	William Greenleaf	May 10, 2016
GSE87424	Enhancer Remodeling During Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacological Targeting of the P-TEFb Complex	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	167	BED CSV IDAT TXT XLSX	Gary L Johnson	Jan 20, 2017
GSE94418	Transcriptional regulation of tDNA in H9 ESCs	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens Mus musculus	13	CSV TSV TXT SRA Run Selector	keith e giles	Feb 02, 2020
GSE97055	Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16	CSV NARROWPEAK	Michael Patrick Morley	Jan 08, 2018
GSE99521	YY1 is a structural regulator of enhancer-promoter loops	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	47	CLOUPE CSV TSV WIG	Richard A Young	Nov 16, 2017
GSE104921	Signal integration in lymphocytes via convergent genomic actions of NFATs with IRF4 and IRF8	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	25	CSV SRA Run Selector	Harinder Singh	Oct 06, 2018
GSE112230	LSD1 ablation stimulates anti-tumor immunity and enables checkpoint blockade	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	29	BW CSV NARROWPEAK SRA Run Selector	Wanqiang Sheng	Jun 21, 2018
GSE112417	Histone Variant H2A.Z Defines Cell Identity in Vascular Smooth Muscle Cells as Revealed by Single-Cell Transcriptomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BIGWIG CSV TXT SRA Run Selector	Li Wang	Jun 08, 2018
GSE112940	ID1 mediates escape from TGFβ Tumor Suppression in Pancreatic Cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	43	CSV TDF	Joan Massague	Oct 31, 2019
GSE115047	A chromatin integration labeling method enables lower-input epigenomic profiling	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	189	BED BW CSV NARROWPEAK SRA Run Selector	Yasuyuki Ohkawa	Oct 09, 2018
GSE117089	Joint profiling of chromatin accessibility and gene expression in thousands of single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	6	CSV TXT SRA Run Selector	Junyue Cao	Aug 29, 2018
GSE120439	PTEN interacts with the transcription machinery on chromatin and regulates RNA polymerase II-mediated transcription.[RNA-seq and ChIP-seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	24	BW CSV SRA Run Selector	Ramon Parsons	Apr 03, 2019
GSE123579	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [species mixture]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	5	CSV TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123581	Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	82	CSV TBI TSV	Caleb Lareau	May 02, 2019
GSE129229	TNF promotes SREBP activity to regulate macrophage polarization and tissue repair	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	46	BED CSV	Sungho Park	Apr 03, 2019