GEO Browser - GEO

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45 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BEDPE
GSE146731	Histone H3.3G34-mutant interneuron progenitors co-opt PDGFRA for gliomagenesis	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	80	BEDPE BW TXT SRA Run Selector	Carol Chen	Nov 30, 2020
GSE149420	UTX condensation underlies its tumor suppressive activity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	78	BEDPE NARROWPEAK TXT SRA Run Selector	Bi Shi	Jul 15, 2021
GSE162609	ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	185	BEDPE BW WIG	Jinxiu Li	Jan 01, 2023
GSE169121	Tcf1 is essential for initiation of oncogenic Notch1-driven chromatin topology.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	61	BEDGRAPH BEDPE HIC TXT	Nadine Fournier	Jan 21, 2022
GSE180175	Hi-TrAC reveals fine-scale chromatin structures organized by transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	136	BEDPE BW TXT SRA Run Selector	Yaqiang Cao	Oct 02, 2022
GSE183556	MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	550	BEDPE TXT	Asifa Akhtar	Aug 10, 2023
GSE208085	Hi-TrAC Detects Active Sub-TADs and Reveals Internal Organizations of Super-Enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	53	BEDPE TXT	Yaqiang Cao	Apr 25, 2023
GSE55581	Diet-induced chromatin remodeling in mice livers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	20	BED BEDPE DIFF NARROWPEAK SRA Run Selector	Amy Leung	Jul 17, 2014
GSE72164	Dynamic reorganization of extremely long-range promoter-promoter interactions between two states of pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	76	BEDGRAPH BEDPE BW TXT SRA Run Selector	Shuang-Yin Wang	Dec 07, 2015
GSE90561	Sox2 is required for functional chromatin connectivity in brain-derived neural stem cells.	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	65	BED BEDGRAPH BEDPE TXT	Federico Zambelli	Mar 07, 2019
GSE115363	ESRRB regulates glucocorticoid gene expression in mice and patients with acute lymphoblastic leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BED BEDPE TXT SRA Run Selector	Julie Zhu	Jul 20, 2020
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE131119	Genome-wide map of open chromatin, trancription factor occupancy, chromatin marks and gene expression profiles in mouse nephron progenitor cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	97	BEDPE BW HIC MTX TSV	Andrew P McMahon	Jan 07, 2021
GSE138822	The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	38	BED BEDPE BIGWIG CSV HIC TXT SRA Run Selector	Jared V Goodman	Apr 13, 2020
GSE141847	Genetic Variations in Type 1 Diabetes Reconfigure the 3D Chromatin Organization of T Cells [HiChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BEDPE SRA Run Selector	Naomi Goldman	Feb 11, 2020
GSE141853	Genetic Variations in Type 1 Diabetes Reconfigure the 3D Chromatin Organization of T Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BEDPE BW TAB	Naomi Goldman	Feb 11, 2020
GSE157339	Architectural role of cell-fate-instructive transcription factor MyoD in orchestrating 3D genome organization in muscle cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	122	BEDPE BW H5 HIC TXT XLS	Yong Zhang	May 01, 2021
GSE159629	Mechanisms underlying strikingly divergent responses of genetically distinct macrophages to IL-4 [HiChIP]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDPE SRA Run Selector	Christopher K Glass	Jun 19, 2021
GSE160943	Oct1 cooperates with Smad transcription factors to promote mesodermal lineage specification	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BED BEDGRAPH BEDPE BW	Dean Tantin	Nov 26, 2022
GSE172358	Differential Regulation of Transcription Factor T-bet Induction during NK Cell Development and Th1 Cell Differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	BED BEDPE NARROWPEAK SRA Run Selector	Yaqiang Cao	Feb 03, 2022