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4142 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BED
GSE202285	Downstream targets of Isl1 in the hindlimb field and genital tubercle	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Alligator mississippiensis Anolis sagrei Gallus gallus Mus musculus Trachemys scripta	76	BED BW NARROWPEAK TXT	Douglas Menke	Apr 04, 2025
GSE64055	Identifying active cis-regulatory elements during the development of the limbs and external genitalia in the mouse and lizard.	Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Mus musculus	21	BED BW SRA Run Selector	Carlos Rafael Infante	Oct 01, 2015
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE81488	In fetal testis, SOX9 acts on transcription and splicing of its targets genes through binding to genomic regions with conserved signatures [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus	6	BED SRA Run Selector	Francis Poulat	Dec 15, 2016
GSE204851	Temporally-Divergent Regulatory Mechanisms Govern Neuronal Diversification and Maturation in the Neocortex	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Callithrix jacchus Mus musculus	94	BED	Paola Arlotta	May 31, 2022
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE71434	Allelic reprogramming of the histone modification H3K4me3 in early mammalian development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus	57	BED TXT SRA Run Selector	Bingjie Zhang	Sep 15, 2016
GSE183002	Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Danio rerio Mus musculus	75	BED BW H5 TXT	Sanjeev Galande	Sep 02, 2021
GSE233198	Differential programs of melanocyte cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	20	BED BW MTX NARROWPEAK TBI TSV	Vivek T Natarajan	Jul 05, 2024
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE32120	The little elongation complex (LEC) regulates small nuclear RNA transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Drosophila melanogaster Mus musculus	22	BED CEL SRA Run Selector	Alexander (Garrett) Garruss	Dec 22, 2011
GSE34304	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	89	BAM BED CEL	Julia Zeitlinger	Dec 20, 2012
GSE41440	Enhancer-associated H3K4 mono-methylation by Drosophila Trithorax-related, the Drosophila homolog of Mll3/Mll4	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	45	BED TAB SRA Run Selector	Alexander (Garrett) Garruss	Dec 01, 2012
GSE67454	A simple method for generating high-resolution maps of genome wide protein binding	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	5	BED WIG SRA Run Selector	Jorja Henikoff	Jun 12, 2015
GSE111000	Ultra-parallel ChIP-seq by barcoding of intact nuclei	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	44	BED BW GFF NARROWPEAK SRA Run Selector	Thomas Manke	Mar 06, 2018
GSE119618	Synergy between variant PRC1 complexes defines Polycomb-mediated gene repression (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	296	BED BW SRA Run Selector	Nadezda A Fursova	Apr 26, 2019
GSE120217	thCHART of roX2 lncRNA [DNA]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	18	BED BIGWIG SRA Run Selector	Matthew D Simon	Mar 11, 2020
GSE120220	Harnessing enhanced nucleotide chemistry and toehold nanotechnology to reveal lncRNA spreading on chromatin	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	34	BED BEDGRAPH BIGWIG	Matthew D Simon	Mar 11, 2020
GSE147879	Two competing mechanisms of DNMT3A recruitment regulate the dynamics of de novo DNA methylation at CpG islands	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	78	BED BEDGRAPH BW SRA Run Selector	Jacek Majewski	May 13, 2021
GSE151983	H3 K27M and EZHIP impede H3K27-methylation spreading by inhibiting allosterically stimulated PRC2.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	43	BED BIGWIG BW	Peter W Lewis	Oct 12, 2020