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14228 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus
GSE202285	Downstream targets of Isl1 in the hindlimb field and genital tubercle	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Alligator mississippiensis Anolis sagrei Gallus gallus Mus musculus Trachemys scripta	76	BED BW NARROWPEAK TXT	Douglas Menke	Apr 04, 2025
GSE64055	Identifying active cis-regulatory elements during the development of the limbs and external genitalia in the mouse and lizard.	Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Mus musculus	21	BED BW SRA Run Selector	Carlos Rafael Infante	Oct 01, 2015
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE104460	PITX1 Promotes Chondrogenesis and Myogenesis in Mouse Hindlimbs Through Conserved Regulatory Targets	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Mus musculus	21	BW	Jialiang Wang	Feb 14, 2018
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE68507	Cross-species comparison of epigenetic poising in the mammalian germ line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus	87	TXT SRA Run Selector	Bluma J Lesch	May 07, 2016
GSE81488	In fetal testis, SOX9 acts on transcription and splicing of its targets genes through binding to genomic regions with conserved signatures [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus	6	BED SRA Run Selector	Francis Poulat	Dec 15, 2016
GSE81490	In fetal testis, SOX9 acts on transcription and splicing of its targets genes through binding to genomic regions with conserved signatures	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus	15		Francis Poulat	Dec 15, 2016
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE182555	HDAC1/2 is indispensable for mouse and bovine ZGA via regulating distribution of H3K27ac and H3K4me3	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus	42		Kun Zhang	May 21, 2022
GSE131616	The transcriptional coactivator CBP/p300 is an evolutionarily conserved node that promotes longevity in response to mitochondrial stress	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens Mus musculus	57		Terytty Yang Li	Dec 07, 2020
GSE204761	Temporally-Divergent Regulatory Mechanisms Govern Neuronal Diversification and Maturation in the Neocortex [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Callithrix jacchus Mus musculus	22	RDS TXT	Paola Arlotta	May 31, 2022
GSE204851	Temporally-Divergent Regulatory Mechanisms Govern Neuronal Diversification and Maturation in the Neocortex	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Callithrix jacchus Mus musculus	94	BED	Paola Arlotta	May 31, 2022
GSE229169	Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus	46	MTX TSV	Bing Ren	Oct 31, 2023
GSE22078	[E-TABM-722] Transcription factor binding evolution in five vertebrates	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Gallus gallus Homo sapiens Monodelphis domestica Mus musculus	61	SRA Run Selector	European Bioinformatics Institute	Jun 02, 2010
GSE77543	Dynamics of NRSF/REST motif evolution favor the canonical NRSE/RE1 form	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Equus caballus Mus musculus	9	TXT SRA Run Selector	Shan Jiang	Jan 01, 2024
GSE80663	Identification of TWIST1 transcriptional targets in the cranial mesoderm	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Mus musculus	39	NARROWPEAK	PIERRE OSTEIL	Aug 23, 2016
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Danio rerio Equus caballus Homo sapiens Mus musculus Sus scrofa domesticus	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE153116	CASB: A concanavalin A-based sample barcoding strategy for single-cell sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Chlorocebus sabaeus Cricetulus griseus Drosophila melanogaster Homo sapiens Mus musculus Rattus norvegicus	197	H5	Guipeng Li	Mar 09, 2021