GEO Browser - GEO

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76 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		HIC
GSE198730	Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	XLSX TSV TBI MTX HIC H5 CSV BED	Vittorio Sartorelli	Jul 31, 2022
GSE157339	Architectural role of cell-fate-instructive transcription factor MyoD in orchestrating 3D genome organization in muscle cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	122	XLS TXT HIC H5 BW BEDPE	Yong Zhang	May 01, 2021
GSE168524	NEURON-SPECIFIC CHROMOSOMAL MEGADOMAIN ORGANIZATION IS ADAPTIVE TO RECENT RETROTRANSPOSON EXPANSIONS	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus Mus spretus	72	XLS TXT HIC SRA Run Selector	Sandhya Chandrasekaran	Oct 11, 2021
GSE236182	Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	WIG TXT HIC BW BIGWIG BEDPE BEDGRAPH	Sergio Niñerola	Dec 04, 2023
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	TXT NARROWPEAK HIC BIGWIG SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	TXT NARROWPEAK HIC FPKM_TRACKING BROADPEAK BIGWIG SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE125595	RNA interactions are essential for proper CTCF function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	24	TXT HIC CLOUPE BW SRA Run Selector	Ricardo Saldana-Meyer	Sep 12, 2019
GSE125972	A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	TXT HIC BIGWIG SRA Run Selector	Sylvia C Hewitt	May 08, 2019
GSE130725	H4K20me3 methyltransferase SUV420H2 shapes the three-dimensional chromatin landscape of pluripotent embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	TXT HIC BEDGRAPH	Benjamin L Kidder	Nov 13, 2020
GSE143293	Histone 1 deficiency drives lymphomagenesis through disruption of 3D chromatin architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	53	TXT TSV MTX HIC SRA Run Selector	Matt Teater	Sep 02, 2020
GSE144834	Balancing cohesin eviction and retention prevents aberrant chromosomal interactions, Polycomb-mediated repression, and X-inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	94	TXT HIC BW SRA Run Selector	Andrea June Kriz	Mar 15, 2021
GSE153402	CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [Hi-C and PLAC-seq]	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	TXT HIC SRA Run Selector	Bing Ren	Jul 06, 2020
GSE153403	CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	88	TXT HIC BW	Bing Ren	Jul 06, 2020
GSE154051	Calcium Signaling Prompts NIPBL Recruitment at Active Enhancers and Promoters via Distinct Mechanisms to Reconstruct Genome Compartmentalization	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	165	TXT HIC BW BEDGRAPH SRA Run Selector	Cornelis Murre	Oct 10, 2020
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	TXT NARROWPEAK HIC BW BEDGRAPH	Danny Reinberg	Feb 06, 2022
GSE169121	Tcf1 is essential for initiation of oncogenic Notch1-driven chromatin topology.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	61	TXT HIC BEDPE BEDGRAPH	Nadine Fournier	Jan 21, 2022
GSE171749	SETDB1/NSD dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	88	TXT HIC BW BROADPEAK BED SRA Run Selector	Amandine BARRAL	Jan 25, 2022
GSE178348	TCF-1 mediates 3D genome reconfiguration during T cell development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	40	TXT MCOOL HIC BW BED	Wenliang Wang	Feb 24, 2022
GSE183675	Tet2 deficiency altered hematopoietic stem and progenitor cells ageing process	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	53	TXT TSV HIC CSV BW SRA Run Selector	Jia Li	Aug 11, 2023
GSE186411	Hnrnpk is essential for embryonic limb bud development as a transcription activator and insulator collaborator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	34	TXT HIC BW SRA Run Selector	Yuyu Chen	Apr 15, 2024