GEO Browser - GEO

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168 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BEDGRAPH
GSE210806	Single-cell triple-omics uncovers DNA methylation as key feature of stemness in the healthy and ischemic adult brain	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	4532	BEDGRAPH COV	Ana Martin-Villalba	Aug 12, 2022
GSE270915	The expression order determines the pioneer functions of Ngn3 and NeuroD1 in pancreatic endocrine differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3745	BEDGRAPH CSV MTX TAR TBI TSV	Cheng-ran Xu	Feb 15, 2025
GSE210817	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	571	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Oct 31, 2023
GSE140611	Dichotomous Engagement of HDAC3 Activity Governs Inflammatory Responses	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	273	BEDGRAPH BIGWIG TDF	Hoang Nguyen	Apr 30, 2020
GSE241338	Genome-wide interference of chromatin architecture and Mediator in transcriptional bursting and gene network regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	250	BEDGRAPH BW CSV MTX TSV	Seolkyoung Jung	Jun 30, 2024
GSE178852	The Pol II prenitiation complex (PIC) influences Mediator binding but not promoter-enhancer looping	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	212	BEDGRAPH TXT XLSX	Fei Sun	Jul 22, 2021
GSE184884	GPS2 sensitizes IL4 pathway via the recruitments of KDM1A	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	203	BEDGRAPH TXT XLSX SRA Run Selector	Zhiqiang Huang	Dec 14, 2022
GSE147925	A Macrophage-Hepatocyte Glucocorticoid Receptor Axis Coordinates Fasting Ketogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	192	BEDGRAPH	Anne Loft	Jan 27, 2022
GSE135808	Topoisomerase 1 Nicking-dependent HP1gamma Engagement Mediates Acute Activation of Phase-separated Enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	167	BED BEDGRAPH BIGWIG	Yuliang Tan	Aug 04, 2022
GSE198390	LIS1 RNA-binding orchestrates the mechanosensitive properties of embryonic stem cells in AGO2-dependent and independent ways	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	166	BEDGRAPH TXT	Orly Reiner	May 04, 2023
GSE154051	Calcium Signaling Prompts NIPBL Recruitment at Active Enhancers and Promoters via Distinct Mechanisms to Reconstruct Genome Compartmentalization	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	165	BEDGRAPH BW HIC TXT SRA Run Selector	Cornelis Murre	Oct 10, 2020
GSE130119	MAFG-driven astrocytes promote CNS inflammation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	163	BEDGRAPH CSV TXT	Michael Wheeler	Feb 12, 2020
GSE235624	MERTK inhibition for the treatment of tissue fibrosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	154	BED BEDGRAPH BIGWIG BW CLOUPE CSV H5 TAB TBI TSV	Ziyan Pan	Mar 05, 2024
GSE210815	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	147	BEDGRAPH TXT WIG	Xiao Ge	Oct 31, 2023
GSE207058	BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	BEDGRAPH BIGWIG WIG XLSX	Elena Pugacheva	Jan 03, 2024
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE234914	Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	133	BED BEDGRAPH CSV H5 HTML TBI TSV	Stephen Smale	Jan 13, 2024
GSE256246	Putative looping factor ZNF143/ZFP143 is an essential transcriptional regulator with no looping function.	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	132	BEDGRAPH BW MCOOL	Domenic Narducci	Mar 07, 2024
GSE134901	Nutrient regulation of the islet epigenome controls adaptive insulin secretion	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus Mus musculus	131	BEDGRAPH DIFF TXT SRA Run Selector	Matthew Wortham	Feb 24, 2023
GSE241444	XIST directly regulates X-linked and autosomal genes in naïve human pluripotent cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	129	BEDGRAPH BROADPEAK	Kathrin Plath	Dec 13, 2023