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3033 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus
GSE101397	Rapid chromatin switch in the direct reprogramming of fibroblasts to neurons	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	41	TXT SRA Run Selector	Qian Yi Lee	Sep 25, 2017
GSE112110	Genome wide map of DMC1 in testis of Stag3-/-, Rec8-/- and Stag3-/-Rec8-/- mice.	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BEDGRAPH TXT SRA Run Selector	Mary Ann Handel	Mar 07, 2019
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Gallus gallus Mus musculus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE129156	Genome-wide maps of H3K9me3 in hematopoietic stem cells from Kdm4a, b, c triple knockout mice	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	XLSX SRA Run Selector	Karl Agger	Apr 02, 2019
GSE129157	The KDM4/JMJD2 histone demethylases are required for hematopoietic stem cell maintenance	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	10	TXT	Karl Agger	Apr 02, 2019
GSE144144	Sexual dimorphism in the meiotic requirement for PRDM9: a mammalian evolutionary safeguard	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED BEDGRAPH TXT SRA Run Selector	Natalie R Powers	Oct 23, 2020
GSE156074	High dimensional association detection in large-scale genomic data	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BED BW TXT SRA Run Selector	Ross Hardison	Nov 18, 2020
GSE159503	Effects of sheared chromatin length on ChIP-seq quality and sensitivity	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	65	BROADPEAK BW XLSX SRA Run Selector	Ross Hardison	Oct 14, 2020
GSE165495	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BW COOL NARROWPEAK TAR TXT	Lucille Lopez-Delisle	Jul 20, 2021
GSE183737	Maternal Smchd1 regulates Hox gene expression and patterning in the mouse embryo [H3K27me3 CUT&RUN]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	TXT SRA Run Selector	Natalia Benetti	Jun 27, 2022
GSE183739	Maternal Smchd1 regulates Hox gene expression and patterning in the mouse embryo [H2AK119ub CUT&RUN]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	28	TXT SRA Run Selector	Natalia Benetti	Jun 27, 2022
GSE183740	Maternal Smchd1 regulates Hox gene expression and patterning in the mouse embryo	Third-party reanalysis Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	179		Natalia Benetti	Jun 27, 2022
GSE193651	Hematopoietic Transcription Factors Bind rDNA and Regulate rRNA Transcription	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23		Vikram R Paralkar	Jan 15, 2022
GSE202285	Downstream targets of Isl1 in the hindlimb field and genital tubercle	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Alligator mississippiensis Anolis sagrei Gallus gallus Mus musculus Trachemys scripta	76	BED BW NARROWPEAK TXT	Douglas Menke	Apr 04, 2025
GSE232216	Light-Assisted Single-Stranded Open-Chromatin Analysis in K562 and Spatially Localized Neuronal Single Cells	Third-party reanalysis Other Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	445	BED	Junhyong Kim	Oct 19, 2023
GSE247511	Cadherins modulate the self-organizing potential of gastruloids	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	83	BW LOOM NARROWPEAK TAR	ALEXANDRE MAYRAN	Jul 18, 2024
GSE272382	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [ChIPM]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BW NARROWPEAK	Lucille Lopez-Delisle	Jul 18, 2024
GSE272483	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	54	BW NARROWPEAK TAR	Lucille Lopez-Delisle	Jul 18, 2024
GSE67955	The landscape of global-long range interactions in mouse and human blood cell lines mediated by Yy1, GATA1, and CTCF during differentiation	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	18	BED TXT SRA Run Selector	Marissa Macchietto	Apr 30, 2019
GSE69143	7SK-BAF axis controls pervasive transcription at enhancers	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	74	BW	Ryan Alexander Flynn	Feb 01, 2016