GEO Browser - GEO

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148 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		MTX
GSE237830	Flexible and scalable control of T cell memory by a reversible epigenetic switch	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BW H5 MTX TSV TXT	Kathleen Abadie	Jul 25, 2023
GSE229513	Symmetry breaking in gastruloid development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BIGWIG H5 MTX RDS RTF TBI TSV TXT	Nadim Aizarani	Apr 29, 2023
GSE165114	Multiomic sequencing of the MGE	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV MTX TSV SRA Run Selector	Kathryn Allaway	Sep 22, 2021
GSE165233	Genetic and epigenetic coordination of cortical interneuron development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	27	BED BW CSV MTX TSV	Kathryn Allaway	Sep 22, 2021
GSE164935	Genetic control of pluripotency epigenome informs differentiation bias in mouse embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	180	CSV MTX TSV SRA Run Selector	Christopher Baker	Oct 05, 2021
GSE160375	Control of neurogenic competence in mammalian hypothalamic tanycytes [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	MTX TXT SRA Run Selector	Seth Blackshaw	Oct 30, 2020
GSE181251	Gene regulatory networks controlling temporal patterning, neurogenesis, and cell fate specification in the mammalian retina.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	38	MTX TXT SRA Run Selector	Seth Blackshaw	Aug 03, 2021
GSE279796	Setdb1 regulates proper differentiation of adult intestinal stem cells via restraining permissive chromatin structure and transcriptional variability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BW MTX TSV	Dimitrios Botskaris	Oct 21, 2024
GSE216406	Multi-scale chromatin footprinting reveals wide-spread alterations to the structure of DNA regulatory elements [scATAC]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED MTX TSV	Jason Buenrostro	Mar 29, 2023
GSE216464	Single-cell multi-scale footprinting reveals the modular organization of DNA regulatory elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	41	BED MTX TSV TXT	Jason Buenrostro	Mar 28, 2023
GSE185345	Defining the Transcriptional and Epigenetic Basis of Organotypic Endothelial Diversity in the Developing and Adult Mouse	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	125	BW MTX SF TSV TXT SRA Run Selector	Manuel Eliezer Cantu Gutierrez	Jul 01, 2022
GSE147671	Lineage tracing reveals the pro-tumorigenic niche role of tissue resident macrophages in early lung cancer lesions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	48	MTX TSV	Maria Casanova Acebes	Apr 12, 2021
GSE146292	Stepwise chromatin and transcriptional acquisition of an intraepithelial lymphocyte program	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	40	BB BED BIGWIG H5 MTX NARROWPEAK TSV SRA Run Selector	Tiago Castro	Jan 04, 2021
GSE198564	An Epigenetic Memory of Inflammation Induces Context-Dependent Lineage Plasticity in the Pancreas with Divergent Phenotypic Outcomes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	115	BED BIGWIG BW H5 MTX TSV TXT	Rohit Chandwani	Oct 24, 2023
GSE152353	The effect of beta-glucan - induced trained immunity on the epigenetic profile of bone marrow granulocyte-macrophage progenitors (GMP) and neutrophils	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED MTX TSV SRA Run Selector	Triantafyllos Chavakis	Oct 30, 2020
GSE211542	Opposing transcriptional circuits governing skeletal muscle development and maturation revealed at single nuclear resolution [snATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	MTX TSV	kenian chen	May 31, 2023
GSE211545	Opposing transcriptional circuits governing skeletal muscle development and maturation revealed at single nuclear resolution.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	16	BED BIGWIG MTX TSV	kenian chen	May 31, 2023
GSE227750	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	150	BW MTX TXT	Yunshun Chen	Sep 08, 2023
GSE186863	PRMT5 deficiency enforces the transcriptional and epigenetic programs of Klrg1+CD8+ terminal effector T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BW MTX TSV	zheyi chen	Nov 01, 2021
GSE166008	Single Nucleus ATAC Sequencing Reveals Epigenomic Regulation After Myocardial Infarction	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED MTX TSV SRA Run Selector	Mingbo Cheng	Feb 01, 2023