GEO Browser - GEO

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1367 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BW
GSE202585	Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	unidentified plasmid Mus musculus	38	BW	Ioanna Tiniakou	Apr 12, 2024
GSE202285	Downstream targets of Isl1 in the hindlimb field and genital tubercle	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Trachemys scripta Mus musculus Gallus gallus Anolis sagrei Alligator mississippiensis	76	BED BW NARROWPEAK TXT	Douglas Menke	Apr 04, 2025
GSE194018	A role for the GATA transcription factor family in X-chromosome inactivation as direct potent Xist activators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Synthetic plasmid Mus musculus	39	BW NARROWPEAK	Till Schwämmle	Jan 26, 2022
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE167358	Distal and proximal cis-regulatory elements sense X-dosage and developmental state at the Xist locus	Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	164	BW HIC NARROWPEAK	Till Schwämmle	Mar 04, 2021
GSE215065	Regulation of mouse chamber selective enhancers	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	synthetic construct Mus musculus	82	BW TXT	Xiaoran Zhang	Jan 30, 2023
GSE218472	Enhancer grammar of liver cell types and hepatocyte zonation states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	79	BW TSV	Carmen Bravo Gonzalez-Blas	Sep 07, 2023
GSE237089	Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types.	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	108	BW CSV	Mati Tesfaye Nemera	Jan 31, 2025
GSE274507	Reporter CRISPR screens decipher cis- and trans-regulatory principles at the Xist locus	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	synthetic construct Mus musculus	244	BW	Till Schwämmle	May 21, 2025
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa domesticus Mus musculus Homo sapiens Equus caballus Danio rerio Canis lupus familiaris	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE132146	Single cell RNA-seq analysis reveals the crucial role of Collagen triple helix repeat containing 1 (Cthrc1) cardiac fibroblasts for ventricular remodeling after myocardial infarction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa Mus musculus Homo sapiens	202	BW H5	Silvia C Hernandez	Sep 29, 2020
GSE108948	Fine Resolution Mapping of TF binding and Chromatin Interactions	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	12	BW CSV SRA Run Selector	Nir Friedman	Mar 06, 2018
GSE115693	DNA accessibility is not the primary determinant of chromatin-mediated gene regulation	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	98	BW	Razvan V. Chereji	Aug 27, 2019
GSE207793	The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming	Other Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	100	BW TAB WIG	Junwoo Lee	Jun 01, 2023
GSE222040	Synthetic reversed sequence reveals default chromatin states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	112	BW NARROWPEAK	Brendan R. Camellato	Dec 30, 2023
GSE252482	Synthetic reversed sequences reveal default genomic states	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	160	BW NARROWPEAK	Brendan R. Camellato	Jan 16, 2024
GSE78688	Activity-dependent transcriptional changes in human neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus Homo sapiens	43	BW SRA Run Selector	Bulent Ataman	Nov 02, 2016
GSE112622	LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus	10	BW SRA Run Selector	Matthew C Lorincz	Jul 06, 2018
GSE190906	Synthetic genomic reconstitution reveals principles of mammalian Hox cluster regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Rattus norvegicus Mus musculus	162	BW	Sudarshan Pinglay	Dec 16, 2021
GSE226498	Epigenetic evolution of the Ly49 gene family [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus	27	BW	Changxu Fan	Apr 20, 2024