GEO Browser - GEO

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68 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TXT
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE147568	A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	101	BW TXT	Daniel Holoch	Aug 19, 2021
GSE67516	A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED BW TXT XLS XLSX SRA Run Selector	John Edward Froberg	Jun 19, 2015
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE121355	A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	201	BEDGRAPH BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 01, 2019
GSE107675	A tissue-specific self-interacting chromatin domain forms independently of enhancer-promoter interactions	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	TXT SRA Run Selector	Jelena M Telenius	Apr 04, 2021
GSE89698	A transposon sensor during epigenetic reprogramming consists of pervasive transcription and endosiRNAs in mouse ES cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	189	TXT	Felix Krueger	Nov 01, 2017
GSE86788	Actively translating transcriptome (Ribotag) profiling of mouse retinal endothelial cells during postnatal development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	TXT XLSX SRA Run Selector	Hyun-Woo Jeong	Sep 26, 2017
GSE214438	Age-associated chromatin re-organization in progenitor B cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	76	BED BEDPE TXT	Yaqiang Cao	Mar 01, 2024
GSE126558	CREB mediates transient and sustained genomic responses to cAMP via distinct mechanisms	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	129	TXT	Sam Van de Velde	Jun 16, 2019
GSE142781	CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	170	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	May 11, 2020
GSE110603	Characterization of tissue-specific BMAL1 cistromes reveals new roles for enhancer-enhancer interactions in regulating rhythmic transcription [ChIA-PET]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	TXT SRA Run Selector	Jerome Menet	May 08, 2018
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE97148	Clonally stable Vκ allelic choice instructs Igκ repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BEDGRAPH TXT SRA Run Selector	Yehudit Bergman	Apr 01, 2017
GSE64365	Degree of Recruitment of DOT1L to MLL-AF9 Defines Level of H3K79 Di- and Tri-methylation on Target Genes and Transformation Potential	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	TXT SRA Run Selector	John H Bushweller	Apr 30, 2015
GSE82255	Destabilization of B2 RNA by EZH2 activates the stress response	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	61	BED BW TXT SRA Run Selector	Athanasios Zovoilis	Dec 19, 2016
GSE174195	Distinct MUNC lncRNA structural domains regulate transcription of different promyogenic factors [ChIRP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	TXT SRA Run Selector	Roza Kamila Przanowska	Jan 21, 2022
GSE84888	Distinct roles for motif affinity, chromatin state, and co-regulatory motifs in PPARγ binding and enhancer activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus synthetic construct	21	TXT SRA Run Selector	Sharon R Grossman	Feb 03, 2017
GSE184490	Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	132	BED BEDGRAPH TXT SRA Run Selector	Dominic Owens	Dec 16, 2021
GSE71884	Dzip3 regulates developmental genes in mouse embryonic stem cells by reorganizing 3D chromatin conformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	TXT	Daishi Inoue	Dec 08, 2015