GEO Browser - GEO

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271 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			TAR
GSE175684	HyDrop: droplet-based scATAC-seq and scRNA-seq using dissolvable hydrogel beads	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	20	BW TAR TSV SRA Run Selector	Stein Aerts	Jun 04, 2021
GSE137266	Single-nucleus chromatin accessibility maps of IDH mutant gliomas point to non-coding RNAs as a major influence on heterogeneity	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	TAR	Ruslan Al-Ali	Sep 12, 2019
GSE84795	Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	114	BW TAR	Guillaume Andrey	Dec 06, 2016
GSE268554	Single-cell joint analysis of DNA oxidative damage and transcriptome [Hela paired damage]	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	TAR TSV	Dongsheng Bai	Jan 06, 2025
GSE268567	Single-cell parallel analysis of DNA damage and transcriptome reveals selective genome vulnerability	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	30	BW TAR TSV	Dongsheng Bai	Jan 03, 2025
GSE239603	APOE4 impairs the microglial response in Alzheimer's disease by inducing TGFbeta-mediated checkpoints	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	274	BW TAR	Rayk Behrendt	Jul 31, 2023
GSE26427	Global Mapping of H3K4me1 and H3K4me3 in human CD4+CD25+FOXP3+ Treg cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED TAR TXT SRA Run Selector	Ni Bing	Jan 31, 2011
GSE96033	Genome-wide Mapping of Lamin B1 Reveals the Existence of Dynamic and Functional Euchromatin Lamin B1 Domains (eLADs) at the onset of the Epithelial to Mesenchymal Transition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	27	BED BEDGRAPH TAR TXT SRA Run Selector	Enrique Blanco	Aug 30, 2018
GSE96107	Multi-scale 3D genome rewiring during mouse neural development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	92	BW NARROWPEAK TAR TXT SRA Run Selector	Boyan Bonev	Oct 18, 2017
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE232926	The primitive endoderm supports lineage plasticity to enable regulative development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	47	BED BW TAR	Josh M Brickman	Jun 25, 2024
GSE199177	The transcription factor IRF2 drives interferon-mediated CD8+ T cell exhaustion to restrict anti-tumor immunity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	H5SEURAT TAR	David Brooks	Nov 10, 2022
GSE162180	The identity of human tissue-emigrant CD8+ T cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	80	TAR TXT	Marcus Buggert	Jan 27, 2021
GSE193463	HMGNs Regulate White Adipocyte Browning By Stabilizing Cell Identity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	102	NARROWPEAK TAR	Michael Bustin	Oct 19, 2022
GSE179393	PRDM16 Is a Compact Myocardium-Enriched Transcription Factor Required to Maintain Compact Myocardial Cardiomyocyte Identity in Left Ventricle	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	44	SF TAR TIFF	Ju Chen	Dec 20, 2021
GSE195882	Prmt5 deficiency inhibits CD4+T cells migration through Klf2-S1pr1 and ameliorates EAE disease (scATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	TAR TSV	zheyi chen	Aug 09, 2023
GSE195888	Prmt5 deficiency inhibits CD4+T cells migration through Klf2-S1pr1 and ameliorates EAE disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	TAR TSV	zheyi chen	Aug 09, 2023
GSE104306	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	9	TAR TXT XLS SRA Run Selector	Saifeng Cheng	Jan 21, 2018
GSE223636	Differential Nodal level promotes mesendoderm cell fate segregation mediated by chromatin organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	TAR TSV	Tao cheng	Jan 28, 2023
GSE126072	CRISPR screening reveals targets to reprogram long-lived effector CD8+ T cells for cancer therapy.	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	50	BW CEL TAR TXT	Hongbo Chi	Dec 11, 2019