GEO Browser - GEO

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231 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			TAB
GSE160087	Chromatin landscape associated with sexual differentiation in a UV sex determination system	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Ectocarpus sp. Ec457 Ectocarpus sp. Ec460	44	BED BW TAB SRA Run Selector	Olivier GODFROY	Mar 21, 2022
GSE242680	New Drosophila promoter-associated architectural protein Mzfp1 interacts with CP190 and is required for housekeeping gene expression and insulator activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	28	TAB	Natalia Klimenko	Jul 17, 2024
GSE164906	"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Genome variation profiling by high throughput sequencing	Mus musculus	476	BW TAB VCF	Yongbing Zhao	Jul 21, 2022
GSE48519	5mC Oxidation by Tet2 Modulates Enhancer Activity and Timing of Transcriptome Reprogramming during Differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	92	BW TAB TXT SRA Run Selector	Gary Chung Hon	Sep 25, 2014
GSE129236	A Role for FACT in RNA Polymerase II Promoter-Proximal Pausing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	162	BW TAB	Joan W Conaway	Jun 14, 2019
GSE139055	A bifunctional nucleosome binding protein mediates specialized mSWI/SNF complex targeting and activity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	70	BW TAB	Cigall Kadoch	Aug 04, 2020
GSE245549	A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	48	BW MTX TAB TSV	Shuchang Liu	Jun 06, 2024
GSE198182	A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	69	BW MCOOL TAB	Maximilian Christian von der Linde	Jan 20, 2023
GSE198179	A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination [Tri-C]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	61	TAB	Maximilian Christian von der Linde	Jan 20, 2023
GSE159875	A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	165	BW TAB	Yavor Bozhilov	Mar 25, 2021
GSE85177	A general transcription co-factor, Smad3, potentiates master transcription factor mediated cell identity conversions [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BIGWIG BROADPEAK GAPPEDPEAK NARROWPEAK TAB TSV SRA Run Selector	Keisuke Kaji	Nov 03, 2017
GSE136373	A lamin-like protein OsNMCP1 regulates drought resistance and root growth partially through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	29	BW TAB SRA Run Selector	Yu Chang	Jun 04, 2020
GSE148170	A role for the Mre11–Rad50–Xrs2 complex in gene expression and chromosome organization	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	29	BW TAB SRA Run Selector	romain forey	Dec 01, 2020
GSE168923	A structural role for histone methyltransferase MET-2 represses transcription independent of H3K9me catalysis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	32	TAB SRA Run Selector	Jan Padeken	Aug 01, 2021
GSE226047	AHR-TFAP2A regulates epidermal differentiation in response to environmental cues	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	BED BEDGRAPH TAB	Jo Huiqing Zhou	Sep 08, 2023
GSE126443	ANKRD31 regulates spatiotemporal patterning of meiotic recombination initiation and ensures recombination between heterologous sex chromosomes in mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BW TAB SRA Run Selector	Julie A. J. Clement	Jun 07, 2019
GSE118913	ANKRD31 anchors meiotic double-strand break formation as a direct partner of REC114	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	BED BIGWIG TAB SRA Run Selector	Kevin Brick	Dec 25, 2019
GSE250562	ANP32E drives vulnerabiliy to ATR inhibitors in Triple Negative Breast Cancer by accumulation of R-loops	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	150	BIGWIG BROADPEAK BW NARROWPEAK SF TAB	Sara Lago	Mar 27, 2025
GSE121198	ARID1A and PI3-Kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	51	BROADPEAK TAB	Ronald L. Chandler	Jul 01, 2019
GSE148474	ARID1A mutations promote P300-dependent endometrial invasion through super-enhancer hyperacetylation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	65	BROADPEAK NARROWPEAK TAB	Ronald L. Chandler	Nov 10, 2020