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231 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			TAB
GSE36631	Dynamic Deposition of the Histone H3.3 Variant Accompanies Developmental Remodeling of Arabidopsis Transcriptome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	20	TAB WIG	Pierre-Étienne Jacques	May 16, 2012
GSE146126	H3.1K27me1 maintains transcriptional silencing and genome stability by preventing GCN5-mediated histone acetylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	32	BW TAB SRA Run Selector	Yannick Jacob	Jun 04, 2021
GSE148753	RNA interference-independent reprogramming of DNA methylation in Arabidopsis	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	72	TAB TXT SRA Run Selector	Taiko Kim To	Sep 30, 2020
GSE253676	Differential usage of shared binding sites drives functional specialization of an essential family of transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	79	BIGWIG TAB	Aman Husbands	Oct 07, 2024
GSE188851	Topoisomerases I and II facilitate the translocation of condensin DC in C. elegans	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans	147	BW HIC TAB	Ana Karina Morao	Nov 16, 2021
GSE56270	Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans.	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	6	TAB SRA Run Selector	Peter Meister	Dec 01, 2014
GSE97775	Two distinct transcription termination modes dictated by promoters	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	51	BW TAB SRA Run Selector	Sarah Carl	Feb 05, 2018
GSE100724	H3K9me2 and BRCA1 cooperate to prevent satellite repeat transcription, R-loop formation and germline sterility [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	16	TAB SRA Run Selector	Jan Padeken	Jul 04, 2017
GSE122335	An unstructured MET-2/SETDB1 cofactor ensures H3K9me2, focus formation and perinuclear anchoring [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	18	TAB SRA Run Selector	Jan Padeken	Feb 06, 2019
GSE156548	Two parallel pathways recruit the H3K9me3 HMT in somatic cells, requiring the Argonaut NRDE-3, or the MBT-domain protein, LIN-61 (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	60	TAB SRA Run Selector	Jan Padeken	Dec 01, 2020
GSE168923	A structural role for histone methyltransferase MET-2 represses transcription independent of H3K9me catalysis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	32	TAB SRA Run Selector	Jan Padeken	Aug 01, 2021
GSE169641	Rhythmic transcription drives mRNA level oscillations during C. elegans development [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	24	BW TAB SRA Run Selector	Helge Grosshans	Dec 31, 2022
GSE237663	cohesin spreads bi-directionally to form chromatin jets in C. elegans	Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans	83	BED BW TAB TXT	Jun Kim	Sep 30, 2023
GSE213999	Kinase-independent activity of DYRK1A promotes viral entry of highly pathogenic human coronaviruses	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Chlorocebus sabaeus	14	TAB	Qin Yan	Apr 02, 2023
GSE119070	Loss of maternal and zygotic ezh2 reveals the function of Polycomb repression in maintenance of gene expression domain after the body plan is established in zebrafish	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio	55	BED TAB SRA Run Selector	Leonie M Kamminga	Sep 07, 2019
GSE168969	Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	38	TAB XLS	Ana Rosa López-Pérez	Mar 16, 2021
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE41440	Enhancer-associated H3K4 mono-methylation by Drosophila Trithorax-related, the Drosophila homolog of Mll3/Mll4	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	45	BED TAB SRA Run Selector	Alexander (Garrett) Garruss	Dec 01, 2012
GSE48431	Multiplexed Illumina sequencing libraries from picogram quantities of DNA	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	2	TAB SRA Run Selector	Sarah Keating Bowman	Jul 01, 2013
GSE76038	The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells [Nodewalk-seq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	88	TAB TXT SRA Run Selector	Rolf Ohlsson	Sep 30, 2019