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61 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			RESULTS
GSE228247	3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	34	BEDPE BW RESULTS	Xiaoyang Zhang	Apr 01, 2024
GSE254090	A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	87	BIGWIG BW RESULTS TAR	Elizabeth C Engle	Aug 06, 2024
GSE190656	Aberrant EVI1 splicing contributes to EVI1-rearranged leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	19	RESULTS TXT	Masaki Nomura	Jun 21, 2022
GSE203322	BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BIGWIG BW MTX RESULTS TSV TXT	Masaki Nomura	Oct 31, 2023
GSE244255	CRISPR screening in human trophoblast stem cells reveals both shared and distinct aspects of human and mouse placental development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	65	BW RESULTS	Eri H Kobayashi	Nov 10, 2023
GSE219168	CRISPR screens identify gene targets at breast cancer risk loci	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	28	BED NARROWPEAK RESULTS	Jonathan Beesley	Mar 08, 2023
GSE178390	Cell cycle states of pluripotent cells dictate lineage decisions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	65	BED RESULTS SRA Run Selector	Muhammad Awawdy	May 19, 2022
GSE162194	Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	50	BW HIC RESULTS	Ryuichiro Nakato	Jun 15, 2022
GSE222113	Comparative characterization of human accelerated regions in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Pan troglodytes	47	MTX RESULTS TSV TXT	Yin Shen	Nov 12, 2024
GSE223453	Complex regulation of Eomes levels mediated through distinct functional features of the Meteor long non-coding RNA locus	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	120	BW RESULTS TXT	Igor Ulitsky	Apr 22, 2023
GSE176493	Comprehensive target engagement by EZH2 inhibitor CPI-0209 allows for preferential targeting of ARID1A mutant urothelial carcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	252	BED BROADPEAK BW NARROWPEAK RESULTS TXT	Patrick Trojer	Jun 26, 2024
GSE195761	Dependency of NELF-E-SLUG-KAT2B epigenetic axis in breast cancer carcinogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	76	BED BW RESULTS XLSX	Zhenhua hu	Apr 14, 2023
GSE282522	Development of a potent epigenetic editor targeting human PCSK9 with durable reduction of cholesterol in mice and non-human primates	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca fascicularis Mus musculus	96	BEDGRAPH RESULTS	Frederic Tremblay	Feb 04, 2025
GSE201681	Dissecting genetic components associated with eye disease using integrative genomic analysis	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	24	BW RESULTS	Kirsty Jamieson	Apr 30, 2022
GSE241927	Dissection of a CTCF topological boundary uncovers principles of enhancer-oncogene regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	65	BW HIC RESULTS	Kyung Lock Kim	Mar 06, 2024
GSE139128	Dominant role of DNA methylation over H3K9me3 for IAP silencing in endoderm	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	104	BIGWIG RESULTS TXT	Gunnar Schotta	Jul 30, 2022
GSE233593	Dor regulates alpha-KG metabolic pathways in mature oligodendrocytes to enhance myelination and reverse age-related remyelination decline	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	9	BIGWIG NARROWPEAK RESULTS	XueLian He	Jul 04, 2024
GSE235858	Dynamic enhancer landscapes in human craniofacial development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BROADPEAK BW NARROWPEAK RESULTS SNAP TXT	Laura E Cook	Sep 11, 2023
GSE214916	Enhancer engagement sustains oncogenic transformation and progression of B-cell precursor acute lymphoblastic leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	57	BEDPE BW MTX NARROWPEAK RESULTS TSV	Stefano Di Giovenale	Jun 27, 2024
GSE199788	Enhancer remodeling drives MLL oncogene-dependent transcriptional dysregulation in leukemia stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	37	BW RESULTS	Feng Pan	Feb 07, 2023