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753 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			MTX
GSE288727	Histone Chaperones Coupled to DNA Replication and Transcription Control Divergent Chromatin Elements to Safeguard Cell Identity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	33	BW MTX TXT	Reuben Franklin	Apr 17, 2025
GSE239529	FOXM1 acts sexually dimorphically to regulate functional B-cell mass	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	BW MTX NARROWPEAK TSV	Christopher Cherry	Apr 15, 2025
GSE264623	Transcriptomic profile of the developing chicken lung	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	4	CLOUPE H5 MTX TBI TSV	Kamryn Gerner-Mauro	Apr 14, 2025
GSE289851	Ontogeny Dictates Oncogenic Potential, Lineage Hierarchy, and Therapy Response in Pediatric Leukemia [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED MTX RDS TSV	BiNGS Core	Apr 11, 2025
GSE289857	Ontogeny Dictates Oncogenic Potential, Lineage Hierarchy, and Therapy Response in Pediatric Leukemia [GoT-ChA]	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	4	BED MTX TSV	BiNGS Core	Apr 11, 2025
GSE253162	Scalable ultra-high-throughput single-cell chromatin and RNA sequencing reveals gene regulatory dynamics linking macrophage polarization to autoimmune disease [NIH-3T3_K562_ATAC_without_blocking]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	1	CSV MTX TSV	Mikael Marttinen	Apr 10, 2025
GSE253164	Scalable ultra-high-throughput single-cell chromatin and RNA sequencing reveals gene regulatory dynamics linking macrophage polarization to autoimmune disease [NIH-3T3_K562_ATAC_with_blocking]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	1	CSV MTX TSV	Mikael Marttinen	Apr 10, 2025
GSE253165	Scalable ultra-high-throughput single-cell chromatin and RNA sequencing reveals gene regulatory dynamics linking macrophage polarization to autoimmune disease.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	4	CSV MTX TSV	Mikael Marttinen	Apr 10, 2025
GSE291640	YAP/TAZ activity in PDGFRa-expressing alveolar fibroblasts modulates lung fibroblast-epithelial cell crosstalk through Wnt4 [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	CSV MTX TXT	David Garfield	Apr 10, 2025
GSE294032	Nuclear receptor-SINE B1 network modulates expanded pluripotency in blastoids and blastocysts.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	101	BW COV MTX TSV	Yingying Zeng	Apr 10, 2025
GSE294221	Integrative Single-Cell RNA and ATAC Sequencing Reveals the Impact of Chronic Cigarette Smoking on Lung Epithelial Responses to Influenza and Hyperoxia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	H5 MTX TSV	Pei-Chun Cha	Apr 10, 2025
GSE264088	Understanding and reversing mammary tumour-driven reprogramming of myelopoieisis to reduce metastatic spread	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	190	BW MTX TSV	Elzo de Wit	Apr 08, 2025
GSE271615	Intestinal secretory differentiation reflects niche-driven phenotypic and epigenetic plasticity of a common signal-responsive terminal cell [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BED CSV MTX TSV	Ramesh A Shivdasani	Apr 08, 2025
GSE258962	ERG activates a stem-like proliferation-differentiation program in prostate epithelial cells with mixed basal-luminal identity [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	MTX TSV	Erik Ladewig	Apr 07, 2025
GSE293575	HyDrop v2: Scalable atlas construction for training sequence-to-function models	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	60	MTX TSV	Gert Hulselmans	Apr 02, 2025
GSE274986	Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration [scMultiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	26	CSV MTX TSV	Federico Gaiti	Apr 01, 2025
GSE215453	SINE-MIR enhancer rewiring by Esrrb architecturally reprogram the pluripotency spectrum	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BW MCOOL MTX TSV	Yingying Zeng	Mar 31, 2025
GSE263362	Chromatin Modification Abnormalities by CHD7 and KMT2C Loss Promote Medulloblastoma Progression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	71	BED H5 MTX TSV	Kohei Kumegawa	Mar 30, 2025
GSE254601	Dynamic Single Cell Transcriptomics Defines Kidney FGF23/KL Bioactivity and Novel Segment-Specific Inflammatory Targets	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	4	BROADPEAK MTX TSV	Kenneth White	Mar 28, 2025
GSE256417	Epigenetic and transcriptomic profiling of mouse neural stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BED BW MTX TSV TXT	Taito Matsuda	Mar 25, 2025