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36 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			H5AD
GSE175533	Revisiting the Hayflick Limit: Insights from an Integrated Analysis of Changing Transcripts, Proteins, Metabolites, and Chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	147	BED BW H5AD XLSX	David G Hendrickson	May 26, 2021
GSE186614	OCA-T1 and OCA-T2 are coactivators of POU2F3 in the tuft cell lineage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	79	BIGWIG H5 H5AD NARROWPEAK TXT SRA Run Selector	Xiaoli Sky Wu	May 01, 2022
GSE194028	Systematic benchmarking of single-cell ATAC sequencing protocols	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	56	H5AD MTX TBI TSV	Stein Aerts	May 22, 2023
GSE194122	A sandbox for prediction and integration of DNA, RNA, and proteins in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	38	H5AD	Daniel B Burkhardt	Jan 24, 2022
GSE202495	Improving stem cell-derived pancreatic islets using single-cell multiome-inferred regulomes [Childhood snATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	H5AD MTX TXT	Maike Sander	Mar 02, 2023
GSE202498	Improving stem cell-derived pancreatic islets using single-cell multiome-inferred regulomes [SC-islet_snATAC]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	H5AD MTX TXT	Maike Sander	Mar 02, 2023
GSE204765	Multi-modal skin atlas associates a multicellular immune-stromal community with altered cornification and T cell expansion in atopic dermatitis.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	46	H5AD RDS	Evgenij Fiskin	May 13, 2025
GSE211785	Spatially resolved human kidney multi-omics single cell atlas highlights the key role of fibrotic microenvironment in kidney disease progression.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	80	H5AD JSON RDS TIFF TXT	Jonathan Levinsohn	Jan 17, 2024
GSE217066	A Transcription Factor Atlas of Directed Differentiation [SHAREseq_210715_combinatorial]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	CSV H5AD	Julia Joung	Jan 05, 2023
GSE217215	A Transcription Factor Atlas of Directed Differentiation [SHAREseq_201218_ATAC]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	36	CSV H5AD RDS TSV SRA Run Selector	Julia Joung	Jan 05, 2023
GSE234788	Single-cell multiome sequencing of human kidney anatomical regions with SHARE-seq	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	7	BED CSV H5 H5AD PY TSV TXT	Haikuo Li	Feb 15, 2024
GSE243917	Multimodal gene expression and chromatin accessibility profiles at the single-cell level of synovial tissue from individuals with arthritis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	24	H5AD	Anika Gupta	Sep 27, 2023
GSE254205	APOE4/4 is linked to damaging lipid droplets in Alzheimer's microglia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	102	H5AD	Tony Wyss-Coray	Feb 01, 2024
GSE262989	Psychedelic control of neuroimmune interactions governing fear	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	108	H5 H5AD NARROWPEAK TAR TXT XLSX	Michael Wheeler	Mar 02, 2025
GSE279945	OP3: single-cell multimodal dataset in PBMCs for perturbation prediction benchmarking	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	102	H5AD	Daniel Burkhardt	Oct 22, 2024
GSE281994	JUNB O-GlcNAcylation-mediated Promoter Accessibility of Metabolic Genes Modulates Distinct Epithelial Lineage in Pulmonary Fibrosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED H5 H5AD TSV TXT	Meshal Ansari	Dec 17, 2024
GSE286214	Two parallel neural ectoderm populations contribute to the developing brain	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	54	H5AD	Arjun Rajan	Jan 09, 2025
GSE290359	Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	96	CSV H5 H5AD TBI TSV	Christopher Jackson	Mar 01, 2025
GSE295277	Microbial cancer immunotherapy reprograms hematopoiesis to enhance myeloid-driven anti-tumor immunity [Human_Mulitome_Cohort1]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	H5AD TSV	Andrew Wayne Daman	Apr 22, 2025
GSE295308	Microbial cancer immunotherapy reprograms hematopoiesis to enhance myeloid-driven anti-tumor immunity [Human_Multiome_Cohort2	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	H5AD TSV	Andrew Wayne Daman	Apr 22, 2025