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199 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			GFF
GSE239790	Sex Lethal is recruited to chromatin by RNA polymerase III [DamID-seq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	32	GFF	Tony David Southall	Apr 18, 2025
GSE294838	Sex-lethal is recruited to chromatin to promote neuronal tRNA synthesis in males through RNA Polymerase III regulation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	47	GFF	Tony David Southall	Apr 18, 2025
GSE163200	Extensive N4 cytosine methylation of Marchantia genes is essential for sperm function [1]	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Marchantia polymorpha subsp. ruderalis	34	BW GFF H5 JSON TSV SRA Run Selector	Xiaoqi Feng	Apr 09, 2025
GSE254154	Extensive N4 Cytosine Methylation is Essential for Marchantia Transcriptional Programming and Sperm Function	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Marchantia polymorpha subsp. ruderalis	36	BW GFF H5 JSON TSV	Xiaoqi Feng	Apr 09, 2025
GSE268698	Predictive Biophysical Neural Network Modeling of a Compendium of in vivo Transcription Factor DNA Binding Profiles for Escherichia coli	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli K-12 Escherichia coli str. K-12 substr. MG1655	424	GFF TSV XLSX	James Galagan	Mar 17, 2025
GSE226119	RpdD and RpoS ChIP-exo in Klebsiella pneumoniae	Genome binding/occupancy profiling by high throughput sequencing	Klebsiella pneumoniae	10	GFF	Donghyuk Kim	Feb 24, 2025
GSE173347	Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T (S fflexneri ChIP-exo)	Genome binding/occupancy profiling by high throughput sequencing	Shigella flexneri	8	GFF SRA Run Selector	Donghyuk Kim	Dec 22, 2024
GSE173348	Genome-wide reconstruction of the bacterial response to single and multiple stress in Shigella flexneri 2a str. 2457T	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Shigella flexneri	12	GFF	Donghyuk Kim	Dec 22, 2024
GSE255857	MNase-seq data in 4 modified strains of Saccharomyces cerevisiae, treated or not with 10-Phenanthroline	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	GFF	Isabelle Brun Heath	Oct 02, 2024
GSE251754	Simultaneous profiling of full-length RNA transcripts and chromatin accessibility within single cells of human retinal organoids	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	GFF H5 MTX TSV TXT	yuhua xiao	Jul 13, 2024
GSE176526	Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	14	BED GFF TXT SRA Run Selector	Xiaoqi Feng	Feb 15, 2024
GSE119965	Experimental promoter identification of a representative food-borne pathogen Salmonella enterica serovar Typhimurium LT2 with near single base-pair resolution	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	8	GFF SRA Run Selector	Donghyuk Kim	Dec 15, 2023
GSE119967	Experimental promoter identification of a representative food-borne pathogen Salmonella enterica serovar Typhimurium LT2 with near single base-pair resolution	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	10	GFF	Donghyuk Kim	Dec 14, 2023
GSE248428	Identification of a novel, tunable interface in the S.pombe HP1 protein, Swi6, that underpins epigenetic inheritance.	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe	28	BEDGRAPH FASTA GFF	Melissa Seman	Nov 27, 2023
GSE218878	Chromatin profile of Anthoceros agrestis	Genome binding/occupancy profiling by high throughput sequencing	Anthoceros agrestis	18	BROADPEAK BW FASTA GFF GFF3 XLSX	Tetsuya Hisanaga	Nov 10, 2023
GSE224967	Chromatin state transitions in the Drosophila intestinal lineage reveal principles of cell type specification	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	63	BEDGRAPH GFF NARROWPEAK	Katarzyna Siudeja	Oct 26, 2023
GSE244017	Uncoupling the distinct functions of HP1 proteins during heterochromatin establishment and maintenance	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe	87	BW FA FASTA GFF GFF3	Melissa Seman	Sep 26, 2023
GSE150240	The Fur Pan-regulon in E. coli shows diversity in strain-specific sets of target genes	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Escherichia coli O157:H7 Salmonella enterica	36	GFF SRA Run Selector	Ye Gao	Aug 04, 2023
GSE223483	The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	4	GFF	Ye Gao	Aug 04, 2023
GSE225409	Dedifferentiation-derived neural stem cells exhibit perturbed temporal progression	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	8	BEDGRAPH GFF	Owen Marshall	May 24, 2023