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80 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			FA
GSE68737	A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies	Other Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	74	BEDGRAPH BW FA SRA Run Selector	Juan J. Tena	Dec 16, 2015
GSE193916	Genome wide identification of BysR binding sites in Burkholderia sp. JP2-270	Genome binding/occupancy profiling by high throughput sequencing	Burkholderia sp. JP2-270	3	FA TXT WIG	Lijuan Wu	Nov 22, 2022
GSE58031	Endogenous germline nuclear RNAi-mediated transcriptional silencing and histone H3 lysine 9 methylation in defined regions of the Caenorhabditis elegans genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	21	FA TXT SRA Run Selector	Sam Guoping Gu	Jan 01, 2015
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE124427	A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Daphnia pulex	31	FA GFF NARROWPEAK TXT SRA Run Selector	Jouni Antero Kvist	Oct 18, 2019
GSE69208	roX ChIRP-seq in four Drosophila species	Genome binding/occupancy profiling by high throughput sequencing	Drosophila busckii Drosophila melanogaster Drosophila virilis Drosophila willistoni	35	BED BEDGRAPH BW FA RTF XLSX SRA Run Selector	Kun Qu	Jan 25, 2016
GSE268512	Transposon and mRNA are distinguished by piRNA’s pairing and piRNA’s expression levels in Ovarian Somatic Cell.	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	33	BED BEDGRAPH BW CSV FA FASTA GTF TSV TXT	Masaru Ariura	Nov 04, 2024
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE181416	The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Homo sapiens	46	BED FA TXT	Daniel Sunwook Kim	Aug 04, 2021
GSE206608	Genome-wide mapping of fluoroquinolone-induced gyrase cleavage sites displays drug specific effects that correlate with bacterial persistence	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	72	FA FASTA TXT	Juechun Tang	Dec 05, 2022
GSE22609	Genome-Wide Maps of WT and DBDmut Estrogen Receptor in Human Breast Cancer Cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED BEDGRAPH FA	Joshua D Stender	Jun 30, 2010
GSE22610	Genome-Wide Analysis of Estrogen Receptor-α DNA Binding and Tethering Mechanisms	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	26	BED BEDGRAPH CEL FA	Joshua D Stender	Jun 30, 2010
GSE27823	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [ChIP-Seq, Gro-Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDGRAPH FA SRA Run Selector	Christopher Benner	May 15, 2011
GSE27824	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	42	BED BEDGRAPH FA	Christopher Benner	May 15, 2011
GSE30992	An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens synthetic construct	16	BOWTIE FA TXT	Xinchen Wang	Sep 15, 2011
GSE31006	An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	FA SRA Run Selector	Xinchen Wang	Sep 15, 2011
GSE48660	An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	FA SRA Run Selector	Jinke Wang	May 05, 2014
GSE63938	Targeted CpG island methylation in human pluripotent stem cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	BEDGRAPH FA SRA Run Selector	April Elizabeth Williams	Dec 01, 2017
GSE69839	CENP-T and CENP-C bridge adjacent CENP-A nucleosomes on young alpha-satellite dimers	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	BED FA SRA Run Selector	Jorja Henikoff	May 24, 2016
GSE103445	Natural regulatory mutations elevate fetal globin via disruption of BCL11A or ZBTB7A binding	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BED BEDGRAPH FA GENOME TXT SRA Run Selector	Merlin Crossley	Jan 29, 2018